View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16813_low_14 (Length: 324)
Name: NF16813_low_14
Description: NF16813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16813_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 29 - 309
Target Start/End: Original strand, 13878489 - 13878769
Alignment:
| Q |
29 |
tatccgattaatatttgtaggtaagattgagtaattaactcaagctggtttcataatagaatgagaccatctatctgctcccaatatcttaacttgctgc |
128 |
Q |
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| T |
13878489 |
tatccgattaatatttgtaggtaagattgagtgattaactcaagctggtttcataatagattgagaccatctatctgctcccaatatcttaacttgctgc |
13878588 |
T |
|
| Q |
129 |
aaaccaatgataatcaatctatatacctattcaactcacaggttaacatgataataaactgcaaaattgtcctattcaaagtctccatttggagataact |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13878589 |
aaaccaatgataatcaatctatatacctattcaactcacaggttaacatgataataaactgcaaaattgtcctattcaaagtctccatttggagataact |
13878688 |
T |
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| Q |
229 |
aaccctcgctcttctctttagctttttgaactgtcgatagattcttcttggtatttgtaaacttcagtccctccagcaatg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13878689 |
caccctcgctcttctctttagctttttgaactgtcgatagattcttcttggtatttgtaaacttcagtccctccagcaatg |
13878769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 14367182 - 14367071
Alignment:
| Q |
64 |
taactcaagctggtttcataatagaatgagaccatctatctgctcccaatatcttaacttgctgcaaaccaatga-taatcaatctatatacctattcaa |
162 |
Q |
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|||| ||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||||| ||||||| | ||||||||||| || ||||||| | |
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| T |
14367182 |
taacacaagctggttttatattagaatgagaccatct----gctcccaatatctgaacttgctgtaaaccaaatagtaatcaatctaaattcctattcca |
14367087 |
T |
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| Q |
163 |
ctcacaggttaacatg |
178 |
Q |
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| T |
14367086 |
ctcacaggttaacatg |
14367071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 307
Target Start/End: Original strand, 16024811 - 16024932
Alignment:
| Q |
182 |
ataaactgcaaaattgtcctattcaaagtctccatttggagataactaaccctcgctcttctctttagctttttgaactgtcga-tagattcttcttggt |
280 |
Q |
| |
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||||||||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||| || ||||||||||| || | ||||| ||||||| |
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| T |
16024811 |
ataaactgcaaaattatcctcttcaaagtctccatttggagataactcacc----ctcttctctttcgc-ttttgaactgtggattcgattcctcttggt |
16024905 |
T |
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| Q |
281 |
atttgtaaacttcagtccctccagcaa |
307 |
Q |
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|| || | |||||||| |||||||||| |
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| T |
16024906 |
atctgcacacttcagtgcctccagcaa |
16024932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 182 - 309
Target Start/End: Original strand, 13884122 - 13884244
Alignment:
| Q |
182 |
ataaactgcaaaattgtcctattcaaagtctccatttggagataactaaccctcgctcttctctttagctttttgaactgtcgatagattcttcttggta |
281 |
Q |
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|||||||| |||||| ||| |||||||| ||||||||||||||||| | | ||||||||||| | ||||||||||||||| |||||||||||||| |
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| T |
13884122 |
ataaactgaaaaattaacctcttcaaagtttccatttggagataact----cacactcttctcttttac-ttttgaactgtcgatcgattcttcttggta |
13884216 |
T |
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| Q |
282 |
tttgtaaacttcagtccctccagcaatg |
309 |
Q |
| |
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| || ||||||||| |||||||||||| |
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| T |
13884217 |
tctgctaacttcagtgcctccagcaatg |
13884244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 13881258 - 13881339
Alignment:
| Q |
64 |
taactcaagctggtttcataatagaatgagaccatctatctgctcccaatatcttaacttgctgcaaaccaatgataatcaatcta |
149 |
Q |
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|||| ||||||||||| || |||| |||||||||||| ||| ||||||||||||||| |||||| ||||||||| |||||||| |
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| T |
13881258 |
taacacaagctggttttatgataggatgagaccatct----gcttccaatatcttaactttctgcaatccaatgatagtcaatcta |
13881339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 305
Target Start/End: Original strand, 13882313 - 13882432
Alignment:
| Q |
182 |
ataaactgcaaaattgtcctattcaaagtctccatttggagataactaaccctcgctcttctctttagctttttgaactgtcgata-gattcttcttggt |
280 |
Q |
| |
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|||||||| |||| | |||| |||||||| ||||||| |||||||| ||| ||||||||||| |||||| ||||||| ||| ||||||||||||| |
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| T |
13882313 |
ataaactgaaaaactatcctcttcaaagtttccatttcaagataact----ctccctcttctctttggctttt-gaactgttgatttgattcttcttggt |
13882407 |
T |
|
| Q |
281 |
atttgtaaacttcagtccctccagc |
305 |
Q |
| |
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|| || |||||||||| |||||||| |
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| T |
13882408 |
atctgcaaacttcagtgcctccagc |
13882432 |
T |
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