View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16813_low_15 (Length: 321)
Name: NF16813_low_15
Description: NF16813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16813_low_15 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 13879379 - 13879691
Alignment:
| Q |
1 |
atcatcatcttcatcttcatcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgtactctatcattttggctttagtgttaacaaag |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13879379 |
atcatcatcttcatcttcgtcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaag |
13879478 |
T |
|
| Q |
101 |
tcgcagtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13879479 |
tcgcagtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaa |
13879578 |
T |
|
| Q |
201 |
tctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcgtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13879579 |
tctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcatc |
13879678 |
T |
|
| Q |
301 |
gttgttgttgttg |
313 |
Q |
| |
|
||||||||||||| |
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| T |
13879679 |
gttgttgttgttg |
13879691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 6 - 300
Target Start/End: Original strand, 13875167 - 13875461
Alignment:
| Q |
6 |
catcttcatcttcatcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgtactctatcattttggctttagtgttaacaaagtcgca |
105 |
Q |
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|||| ||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||| | |
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| T |
13875167 |
catcatcatcttcatcttcttccttgttgttgagcttgggaaccacaatttcaaggaaattgttctctatcattttggctttagtgttaacaacgtcgaa |
13875266 |
T |
|
| Q |
106 |
gtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctct |
205 |
Q |
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|||||||||||||||| ||||| ||||||| |||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13875267 |
atgcttccctttcaagtcgagtgtacctgaaaatcgatttcgacctggaagagcatccttaatcctgagagtaccgtgatcaacacagacatcaatctct |
13875366 |
T |
|
| Q |
206 |
tccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcgtt |
300 |
Q |
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|||||||||||||||| ||||| |||||| |||| ||||||| ||||||||| |||||| |||||| ||||||||||||| || |||||||| |
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| T |
13875367 |
tccttcctcacgttgttggcgaccagattcaaccgaaaaatcaaagactcctcggtctcctcaaaatcacagagaacaagataatagtcatcgtt |
13875461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 4879 - 4851
Alignment:
| Q |
2 |
tcatcatcttcatcttcatcttcttcctt |
30 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4879 |
tcatcatcttcatcttcatcttcttcctt |
4851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 42827129 - 42827157
Alignment:
| Q |
2 |
tcatcatcttcatcttcatcttcttcctt |
30 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42827129 |
tcatcatcttcatcttcatcttcttcctt |
42827157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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