View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16813_low_18 (Length: 266)
Name: NF16813_low_18
Description: NF16813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16813_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 26622019 - 26621770
Alignment:
| Q |
1 |
cgccacatatatatcgtttgagaggtgactgtcccgccaaacgctcctcgctctttgacaatcaaacagaacatgaaggtcatcttcataatttcctaca |
100 |
Q |
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| T |
26622019 |
cgccacatatatatcgtttgagaggtgactgtcccgccaaacgctcctcgctctttgacaatcaaacaaaacatgaaggtcatcttcataatttcca--- |
26621923 |
T |
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| Q |
101 |
atcttcacacatagaacacacagaggcacagttcactcttttatctaacaatttggcacgagctggtaagcatccccggcatattctccatatcaagttc |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| |
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| T |
26621922 |
----tcacacatagaacacacagaggtacagttcactcttttatctaacaatttggcacaagttggtaagcatccccgacatattctccatatcaagttc |
26621827 |
T |
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| Q |
201 |
ttcaccttcggaggagccttcaacttccaaattccattccaaaaacccagtctgtgc |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26621826 |
ttcaccttcggaggagccttcaacttccaaattccattccaaaaacccagtatgtgc |
26621770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 7175477 - 7175229
Alignment:
| Q |
1 |
cgccacatatatatcgtttgagaggtgactgtcccgccaaacgctcctcgctctttgacaatcaaacagaacatgaaggtcatcttcataatttcctaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7175477 |
cgccacatatatatcgtttgagaggtgactgtcccgccaaatgctcctcgctctttgacaatcaaacagaacatgaaggtcatcttcataatttcca--- |
7175381 |
T |
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| Q |
101 |
atcttcacacatagaacacacagaggcacagttcactcttttatctaacaatttggcacgagctggtaagcatccccggcatattctccatatcaagttc |
200 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
7175380 |
----tcacacatagaacacatagaggtacagttcactcttttatctaacagtttggcacgagttggtaagcatcccaggcatattctccatatcaagttc |
7175285 |
T |
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| Q |
201 |
ttcaccttcggaggagccttcaacttccaaattccattccaaaaacccagtctgtg |
256 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7175284 |
ttcaccttcggagaagccttcaacttccaaattccattccaaaaacccggtctgtg |
7175229 |
T |
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