View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16813_low_20 (Length: 248)
Name: NF16813_low_20
Description: NF16813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16813_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 11987602 - 11987833
Alignment:
| Q |
17 |
caaattggcccttatttttcaaatgatagaaatcttttagtactctatcaaaacaaaaacattttagaaaatgaatgcaattcaacataatcatttaaat |
116 |
Q |
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| T |
11987602 |
caaattggcccttattttccaaatgatagaaatcttttagtactctatcaaaacgaaaacattttaaaaaatgaatgcaattcaacataatcatttaaat |
11987701 |
T |
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| Q |
117 |
tgtctatgattctaaattctttaacattaccaactatcccatcaaaacacacacttaattcatgtgattcagtgaataagatcatatatttagaaacaga |
216 |
Q |
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| T |
11987702 |
tgtctataattctaaattctttaacattaccaactatcccatcaaaacaaacacttaattcatgtgattcagtgaataagatcatatatttagaaacaga |
11987801 |
T |
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| Q |
217 |
aatattatattcgatttagtaacatctctcat |
248 |
Q |
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| T |
11987802 |
aatattatattcgatttagtaacatctctcat |
11987833 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 17541951 - 17541916
Alignment:
| Q |
105 |
aatcatttaaattgtctatgattctaaattctttaa |
140 |
Q |
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| T |
17541951 |
aatcatttaaattgtctaggattctaaattctttaa |
17541916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 22304665 - 22304734
Alignment:
| Q |
105 |
aatcatttaaattgtctatgattctaaattctttaacattac-caactatcccatcaaaacacacactta |
173 |
Q |
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| T |
22304665 |
aatcatttaaattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacacactta |
22304734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 24241778 - 24241743
Alignment:
| Q |
105 |
aatcatttaaattgtctatgattctaaattctttaa |
140 |
Q |
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| T |
24241778 |
aatcatttaaattgtctaggattctaaattctttaa |
24241743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 11141787 - 11141822
Alignment:
| Q |
105 |
aatcatttaaattgtctatgattctaaattctttaa |
140 |
Q |
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| T |
11141787 |
aatcatttaaattgtctaggattctaaattctttaa |
11141822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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