View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16813_low_21 (Length: 237)

Name: NF16813_low_21
Description: NF16813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16813_low_21
NF16813_low_21
[»] chr8 (6 HSPs)
chr8 (1-237)||(11987824-11988057)
chr8 (1-136)||(12013037-12013172)
chr8 (1-133)||(12003126-12003258)
chr8 (1-111)||(11996659-11996769)
chr8 (1-178)||(12008533-12008710)
chr8 (4-111)||(11973155-11973262)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 11988057 - 11987824
Alignment:
Q  1 gtcagctaaagaatgcatccaaataaattattatggggctaagagaacatttgaataccttcttcccctccttcaactatctgattcaccaagagtagtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11988057 gtcagctaaagaatgcatccaaataaattattatggggctaagagaacatttgaataccttcttcccctccttcaactatctgattcaccaagagtagtc 11987958  T
Q  101 aatgtatcatctggagcgggcaagataaaggtaagcttatttttatataaataaattcttaagaatgaataagcttgttggtgcccaaatagaaaattag 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  11987957 aatgtatcatctggagcgggcaagatagaggtaagcttatttttatataaataaattcttaagaatgaataagc---ttggtgcccaaatagaaaattag 11987861  T
Q  201 ctaattagtgccccaactcattatgttatgagagatg 237  Q
    |||||||||||||||||||||| ||||||||||||||    
T  11987860 ctaattagtgccccaactcattctgttatgagagatg 11987824  T

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Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 12013172 - 12013037
Alignment:
Q  1 gtcagctaaagaatgcatccaaataaattattatggggctaagagaacatttgaataccttcttcccctccttcaactatctgattcaccaagagtagtc 100  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  12013172 gtcagctaaagaatgcattcaaataaattattatggggctaaaagaacatttgaataccttcttcctctccttcaattatctgattcaccaagagtagtc 12013073  T
Q  101 aatgtatcatctggagcgggcaagataaaggtaagc 136  Q
    |||||||||||  |||| |||| |||  ||||||||    
T  12013072 aatgtatcatcgagagcaggcacgatggaggtaagc 12013037  T

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Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 12003258 - 12003126
Alignment:
Q  1 gtcagctaaagaatgcatccaaataaattattatggggctaagagaacatttgaataccttcttcccctccttcaactatctgattcaccaagagtagtc 100  Q
    ||||||||||||||||||  |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  12003258 gtcagctaaagaatgcatagaaataaattattatggagctaaaagaacatttgaataccttcttcccctccttcaattatctgattcaccaaaagtagtc 12003159  T
Q  101 aatgtatcatctggagcgggcaagataaaggta 133  Q
    ||||||||||| |||  |||||||||| |||||    
T  12003158 aatgtatcatcaggattgggcaagatagaggta 12003126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 11996769 - 11996659
Alignment:
Q  1 gtcagctaaagaatgcatccaaataaattattatggggctaagagaacatttgaataccttcttcccctccttcaactatctgattcaccaagagtagtc 100  Q
    |||||||||||||||||| |||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11996769 gtcagctaaagaatgcattcaaataaattattatggggcaaaaagagcatttgaataccttcttcccctccttcaattatctgattcaccaagagtagtc 11996670  T
Q  101 aatgtatcatc 111  Q
    |||||||||||    
T  11996669 aatgtatcatc 11996659  T

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Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 12008710 - 12008533
Alignment:
Q  1 gtcagctaaagaatgcatccaaataaattattatggggctaagagaacatttgaataccttcttcccctccttcaactatctgattcaccaagagtagtc 100  Q
    |||||||||||||||||| |||||||||||| |||| ||||| ||||||||||| ||||||||||||||||| ||  |||| ||||||||| ||||||||    
T  12008710 gtcagctaaagaatgcattcaaataaattatcatggagctaaaagaacatttgagtaccttcttcccctcctccagttatcggattcaccacgagtagtc 12008611  T
Q  101 aatgtatcatctggagcgggcaagataaaggtaagcttatttttatataaataaattcttaagaatgaataagcttgt 178  Q
    |||||||||||      |||||||||| ||||||||| || | || || |||||||| || | |||||||||||||||    
T  12008610 aatgtatcatcatttttgggcaagatagaggtaagctaatatgtacattaataaatttttcataatgaataagcttgt 12008533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 11973262 - 11973155
Alignment:
Q  4 agctaaagaatgcatccaaataaattattatggggctaagagaacatttgaataccttcttcccctccttcaactatctgattcaccaagagtagtcaat 103  Q
    |||| |||||||| | |||| |||||||||||| || || | |||   |||||  ||||| |||||||||||  ||||||||||||||||| | || |||    
T  11973262 agctgaagaatgcttgcaaacaaattattatggagcaaaaataactactgaatcacttctacccctccttcagttatctgattcaccaagaattgtgaat 11973163  T
Q  104 gtatcatc 111  Q
    ||||||||    
T  11973162 gtatcatc 11973155  T

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