View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16813_low_23 (Length: 233)
Name: NF16813_low_23
Description: NF16813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16813_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17924138 - 17923916
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17924138 |
ttcttttaacatgttggaaggagaggtaccgacaaatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
17924039 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17924038 |
tcccacctgcatctaccaccatgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
17923939 |
T |
|
| Q |
201 |
ttctcatactttcatttttcatc |
223 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
17923938 |
ttctcatactttcatttatcatc |
17923916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12899044 - 12899265
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12899044 |
ttcttttaacatgttggaaggagaggtaccgacaaatggtgtatttggaaatgcaacgcaaatagaagtgattggaaacaaaaagctctgtggaggtatt |
12899143 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12899144 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgtaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
12899243 |
T |
|
| Q |
201 |
ttctcatactttcatttttcat |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
12899244 |
ttctcatactttcatttatcat |
12899265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12931753 - 12931974
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12931753 |
ttcttttaacatgttggaaggagaggtaccgacaaatggtgtatttggaaatgcaacccaaatagacttgattggaaacaaaaagctttgtggaggtatt |
12931852 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12931853 |
tcccacctgcatctaccaccatgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgctagttagtgtggtttctttta |
12931952 |
T |
|
| Q |
201 |
ttctcatactttcatttttcat |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
12931953 |
ttctcatactttcatttatcat |
12931974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12957552 - 12957773
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12957552 |
ttcttttaacatattggaaggagaggtaccgacaaatggtgtatttggaaatgcaagccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
12957651 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
200 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12957652 |
tcccatctgcatctaccaccatgccctatcaagggtaggaaacatgcaaagcaacacaagttcaggttgatagcagtgatagttagtgcggtttctttta |
12957751 |
T |
|
| Q |
201 |
ttctcatactttcatttttcat |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
12957752 |
ttctcatactttcatttatcat |
12957773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12906664 - 12906885
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
12906664 |
ttcttttaacatgttggaaggagaggtaccgacaaaaggtttatttggaaattcaacccaaatagaattgattggaaacaaaaagctttgtggaggcatt |
12906763 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
200 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12906764 |
tcccacctgcatctaccaccatgctctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtcatagttagtgtggtttctttta |
12906863 |
T |
|
| Q |
201 |
ttctcatactttcatttttcat |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
12906864 |
ttctcatactttcatttatcat |
12906885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12948118 - 12948339
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12948118 |
ttcttttaacatgttggtaggagagataccgacaaatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctatgtggaggtatt |
12948217 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12948218 |
tcccacctgcatctaccaccatgccctatcaatggtaggaaacatgcaaagcaacaaaagttcaggttgatagcagggatagttagtgtggtttctttta |
12948317 |
T |
|
| Q |
201 |
ttctcatactttcatttttcat |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
12948318 |
ttctcatactttcatttatcat |
12948339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10564501 - 10564722
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10564501 |
ttcttttaacatgttggaaggagatgtaccattaaatggtgtatttggaaatgtaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
10564600 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
200 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
10564601 |
tcccagctgcatctaccaccatgccctatcaagggtaggaaacatgcaaaacagaaaaagatcaggttgatggcagtgataattagtgtggtttcttttc |
10564700 |
T |
|
| Q |
201 |
ttctcatactttcatttttcat |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
10564701 |
ttctcatactttcatttatcat |
10564722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10763868 - 10763647
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||| |||| ||||||||||||| | ||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
10763868 |
ttcttttaacatgttggaaggcgaagtaccaacaaatggcgtatttggaaatgtatcccaaatagaagtgactggaaacaagaagctttgtggaggtatt |
10763769 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
200 |
Q |
| |
|
|||| || ||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10763768 |
tcccggctacatctaccatcatgccctgtcaagggtattaaacatgcaaaacgacacaagttcaggttgatagcagtgatagttagcgtggtttcttttc |
10763669 |
T |
|
| Q |
201 |
ttctcatactttcatttttcat |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
10763668 |
ttctcatactttcatttatcat |
10763647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10741434 - 10741218
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
|||||||||| | ||||||||||||||||| ||| |||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10741434 |
ttcttttaacttattggaaggagaggtaccaacaaatggtgtatttggaaatgtatctcaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
10741335 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
200 |
Q |
| |
|
|| | ||||||||||| | ||||||||||||| ||| |||||||||||| |||| || |||| ||||||||||||||||||||| ||| |||||||| |
|
|
| T |
10741334 |
tcagagttgcatctaccatcatgccctatcaaggatagtaaacatgcaaaaaaacataatttcaagttgatagcagtgatagttagcgtgatttcttttc |
10741235 |
T |
|
| Q |
201 |
ttctcatactttcattt |
217 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
10741234 |
tgctcatactttcattt |
10741218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10747750 - 10747534
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| | | |||||||||||||||||| |||| || ||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
10747750 |
ttcttttaacatgttggaaggtgaggtaccaaaaaatggtgtatttggaaatgtaaccaaagtagaattgattggaaacaataagctttgtggaggtatt |
10747651 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
200 |
Q |
| |
|
| | |||||| ||||||| ||||||||||||||||||||| | ||||||| || || |||| |||| | ||||||||||||||||| |||| |||| |
|
|
| T |
10747650 |
ttgctgctgcatttaccaccatgccctatcaagggtaggaaagacacaaaacaccataaattcatgttggtcgcagtgatagttagtgttgttttttttc |
10747551 |
T |
|
| Q |
201 |
ttctcatactttcattt |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10747550 |
ttctcatactttcattt |
10747534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 10611184 - 10611400
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
||||||||||||| ||||||| ||||| |||||| ||||||| ||| |||||||| || || ||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
10611184 |
ttcttttaacatgctggaaggtgaggtcccgacaaatggtgtctttagaaatgcatccaaagtagcaatgattggaaacaataagctttgtggaggtatt |
10611283 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
200 |
Q |
| |
|
|| || ||||||||| |||| ||||||||||||||||||||||| ||||||| || | |||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
10611284 |
tctcagctgcatctagcaccatgccctatcaagggtaggaaacacccaaaacaccatatattcaggctgatagcagtgatagttagcatggtttcttttc |
10611383 |
T |
|
| Q |
201 |
ttctcatactttcattt |
217 |
Q |
| |
|
|||||||| ||| |||| |
|
|
| T |
10611384 |
ttctcatatttttattt |
10611400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10717675 - 10717459
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||| |||| ||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
10717675 |
ttcttttaacatgttggaaggtgaggtaccaacagatggtgtttttgcaaatgcatcccatatagacatgattggaaactataagctttgtggaggtatt |
10717576 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
200 |
Q |
| |
|
|| | ||||||||||| | ||||||||||||||||| || ||||||| |||| || |||| |||||||||||||||| |||||||| ||| |||| |
|
|
| T |
10717575 |
tcagagttgcatctaccatcatgccctatcaagggtagtaagagtgcaaaaaaacataatttcaagttgatagcagtgatatttagtgtgattttttttt |
10717476 |
T |
|
| Q |
201 |
ttctcatactttcattt |
217 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
10717475 |
tgctcatactttcattt |
10717459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 11049392 - 11049176
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||| | ||||| ||||||||||||||||| ||| | |||| |||||||| |||||||||||||||||| |
|
|
| T |
11049392 |
ttcttttaacctgttggaaggcgaggtaccaacaaacggtgtctttggaaatgcaacccatgtagcaatgataggaaacaataagctttgtggaggtatt |
11049293 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
200 |
Q |
| |
|
|| | ||||||||||| | ||||||||||| ||||| |||||||||| | | || || ||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
11049292 |
tcagatttgcatctaccatcatgccctatcaaaggtagaaaacatgcaacaaaccataatttcaggttggtatcagtgatagttagtgtggtttcttttc |
11049193 |
T |
|
| Q |
201 |
ttctcatactttcattt |
217 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
11049192 |
ttatcatactttcattt |
11049176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 10580465 - 10580681
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| | ||| | | ||||||||||| || |||||||| |||||| |
|
|
| T |
10580465 |
ttcttttaacatgttggaaggtgaggtaccaacagatggtgtctttggaaatgcaaccagagtagcaataattggaaacaataaactttgtggtggtatt |
10580564 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttctttta |
200 |
Q |
| |
|
|| | | ||||||||||| |||||| ||||||||||||||||| |||| | || || |||| ||||||||| ||||||| ||||||||||||||| |
|
|
| T |
10580565 |
tcagagttacatctaccaccatgccctttcaagggtaggaaacatataaaaaaccataatttcaagttgatagctatgatagtcagtgtggtttcttttc |
10580664 |
T |
|
| Q |
201 |
ttctcatactttcattt |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10580665 |
ttctcatactttcattt |
10580681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10217484 - 10217268
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| | ||||| |||||||||| ||| | || | ||||||||||||| |||||||||||||||||| |
|
|
| T |
10217484 |
ttcttttaacatgttggaaggggaggtaccaacaaacggtgtctttggaaatgtaac--atgtaacaatgattggaaacaataagctttgtggaggtatt |
10217387 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtga--tagttagtgtggtttcttt |
198 |
Q |
| |
|
|| | ||||||| || | ||||||||||| |||||||||||||||| | | | || | |||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
10217386 |
tcagagttgcatctggcatcatgccctatcaacggtaggaaacatgcaacaaactataattccaggttgatatcagtgagatagttagtgtggtttcttt |
10217287 |
T |
|
| Q |
199 |
tattctcatactttcattt |
217 |
Q |
| |
|
| || |||||||||||||| |
|
|
| T |
10217286 |
tcttatcatactttcattt |
10217268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 214
Target Start/End: Original strand, 10604230 - 10604439
Alignment:
| Q |
5 |
tttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatttccc |
104 |
Q |
| |
|
||||||||||||||||| ||||| || ||| | ||||| ||| |||||||||||||| ||| | |||| ||||| | |||||||||||||| ||||| | |
|
|
| T |
10604230 |
tttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattataagctttgtggaggaatttcac |
10604329 |
T |
|
| Q |
105 |
acctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattct |
204 |
Q |
| |
|
| ||||||||||||| ||| || ||||| || |||| || ||||| | || |||||||||||||||||||||| ||||||| |||||| || | |
|
|
| T |
10604330 |
agttgcatctaccaccatgctctgtcaagcgttggaagcacacaaaaaatcattttcccaggttgatagcagtgatagttggtgtggtgtcttttctttt |
10604429 |
T |
|
| Q |
205 |
catactttca |
214 |
Q |
| |
|
|||||||||| |
|
|
| T |
10604430 |
catactttca |
10604439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 10601324 - 10601436
Alignment:
| Q |
8 |
aacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatttcccacc |
107 |
Q |
| |
|
|||||||||||||||||||| || ||| | ||||| ||||||||||||||| | ||| | |||||||||| | |||||||||||||| ||||| || |
|
|
| T |
10601324 |
aacatgttggaaggagaggtgccaacaaacggtgtctttggaaatgcaaccagagtagcattgattggaaattacaagctttgtggaggaatttcacagt |
10601423 |
T |
|
| Q |
108 |
tgcatctaccacc |
120 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10601424 |
tgcatctaccacc |
10601436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 19606600 - 19606476
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| || | ||| ||||| ||||||||||| | | ||| ||||| || ||||| |||||||||||||||||| |
|
|
| T |
19606600 |
ttcttttaacatgttggatggagaggttcctaaagaaggtgtctttggaaatgctagtgcattagcagtgaccgggaacaataagctttgtggaggtatt |
19606501 |
T |
|
| Q |
101 |
tcccacctgcatctaccaccgtgcc |
125 |
Q |
| |
|
|| || ||||| |||||||| |||| |
|
|
| T |
19606500 |
tcgcatctgcacctaccaccatgcc |
19606476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 7192479 - 7192580
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtatt |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||| ||||| |||||||||| || | | ||| |||| |||||||| || ||||||||||||||| |
|
|
| T |
7192479 |
ttctttcaacatgttggaaggcgaggtaccaacagaaggtgtctttggaaatgtaagcaagttagctgtgaccggaaacaataaactttgtggaggtatt |
7192578 |
T |
|
| Q |
101 |
tc |
102 |
Q |
| |
|
|| |
|
|
| T |
7192579 |
tc |
7192580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 10589094 - 10588974
Alignment:
| Q |
69 |
tgattggaaacaaaaagctttgtggaggtatttcccacctgcatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggtt |
168 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| | ||||||||||| || ||||||||||| | || |||| | ||||||| | |||||| | ||| |
|
|
| T |
10589094 |
tgattggaaacaataagctttgtggaggagttttagagctgcatctaccgccatgccctatcaaagttataaaacctacaaaacacctcaagttgaagtt |
10588995 |
T |
|
| Q |
169 |
gatagcagtgatagttagtgt |
189 |
Q |
| |
|
| ||||||||||| ||||||| |
|
|
| T |
10588994 |
ggtagcagtgataattagtgt |
10588974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10652934 - 10652883
Alignment:
| Q |
1 |
ttcttttaacatgttggaaggagaggtaccgacagatggtgtatttggaaat |
52 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| ||| ||||| ||||||||| |
|
|
| T |
10652934 |
ttctttcaacatgttggaaggagaagtaccgaaagaaggtgtctttggaaat |
10652883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 10601484 - 10601532
Alignment:
| Q |
166 |
gttgatagcagtgatagttagtgtggtttcttttattctcatactttca |
214 |
Q |
| |
|
|||||| |||||||||||| ||||||| |||| | |||||||||||||| |
|
|
| T |
10601484 |
gttgatggcagtgatagttggtgtggtgtcttctcttctcatactttca |
10601532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 31467737 - 31467687
Alignment:
| Q |
161 |
ttcaggttgatagcagtgatagttagtgtggtttcttttattctcatactt |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
31467737 |
ttcaagttgatagcagtgatagttagtgtggtttcttttcttcttatactt |
31467687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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