View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16813_low_6 (Length: 441)

Name: NF16813_low_6
Description: NF16813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16813_low_6
NF16813_low_6
[»] chr1 (5 HSPs)
chr1 (1-220)||(44686005-44686221)
chr1 (118-220)||(28652932-28653034)
chr1 (118-220)||(44685632-44685734)
chr1 (143-220)||(28652814-28652891)
chr1 (389-426)||(44685913-44685950)
[»] chr5 (2 HSPs)
chr5 (118-220)||(21780207-21780309)
chr5 (118-220)||(21779677-21779779)
[»] chr3 (3 HSPs)
chr3 (118-220)||(47483154-47483256)
chr3 (118-220)||(47483663-47483765)
chr3 (115-220)||(18983637-18983742)
[»] chr2 (2 HSPs)
chr2 (120-220)||(42843221-42843321)
chr2 (118-220)||(42839436-42839538)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 44686221 - 44686005
Alignment:
Q  1 taggtcttaggtagttttctttttcagcccaatcaccatccaacaaaacaaactagtataagatattgcaagacattataaccaatatccgttttgttgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||| |    
T  44686221 taggtcttaggtagttttctttttcagcccaatcaccatccaacaaaacaaacta---taagatattgcaagacattatgaccaatatccgttttgttag 44686125  T
Q  101 ctcacatagggggagttcggatcctctccatttcctctgagaatggggatcggcatttccttgccttacggaactacatgtggcgtaagtagaaaccaac 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||| | ||| |||||||||    
T  44686124 ctcacagagggggagttcggatcctctccatttcctctgagaatggggatcaacatttccttgccttgcggaactacatgtggcattagtggaaaccaac 44686025  T
Q  201 ggatgagatctattctttct 220  Q
    ||||||||||||||||||||    
T  44686024 ggatgagatctattctttct 44686005  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 28653034 - 28652932
Alignment:
Q  118 cggatcctctccatttcctctgagaatggggatcggcatttccttgccttacggaactacatgtggcgtaagtagaaaccaacggatgagatctattctt 217  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||||||| |||||| |||||||||||||||  |||||||||| ||| ||||||||||    
T  28653034 cggatcctctccatttccattgaaaatggggatcggcatttccttgccttgcggaacgacatgtggcgtaagtgaaaaccaacggttgaaatctattctt 28652935  T
Q  218 tct 220  Q
    |||    
T  28652934 tct 28652932  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 44685632 - 44685734
Alignment:
Q  118 cggatcctctccatttcctctgagaatggggatcggcatttccttgccttacggaactacatgtggcgtaagtagaaaccaacggatgagatctattctt 217  Q
    ||||||||||||||||||  ||| ||||||||||  ||||||||| |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  44685632 cggatcctctccatttccaatgaaaatggggatccacatttccttaccttgcggaactacatgtgccgtaagtggaaaccaacggatgagatctattctt 44685731  T
Q  218 tct 220  Q
    |||    
T  44685732 tct 44685734  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 28652814 - 28652891
Alignment:
Q  143 atggggatcggcatttccttgccttacggaactacatgtggcgtaagtagaaaccaacggatgagatctattctttct 220  Q
    ||||||||| |||||| |||||||| |||||| |||||||||||||||  |||||||||| |||||||||||||||||    
T  28652814 atggggatcagcattttcttgccttgcggaacgacatgtggcgtaagtgaaaaccaacggttgagatctattctttct 28652891  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 426
Target Start/End: Complemental strand, 44685950 - 44685913
Alignment:
Q  389 atttgttcctgtattgtaattaagcataatgaaattca 426  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44685950 atttgttcctgtattgtaattaagcataatgaaattca 44685913  T

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Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 21780309 - 21780207
Alignment:
Q  118 cggatcctctccatttcctctgagaatggggatcggcatttccttgccttacggaactacatgtggcgtaagtagaaaccaacggatgagatctattctt 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| |||  |||| ||||| |||||||| || ||||||||||||||    
T  21780309 cggatcctctccatttcctctgaaaatggggatcggcatttcctttccttgcggaacgacacatggcataagtggaaaccaaaggttgagatctattctt 21780210  T
Q  218 tct 220  Q
    |||    
T  21780209 tct 21780207  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 21779677 - 21779779
Alignment:
Q  118 cggatcctctccatttcctctgagaatggggatcggcatttccttgccttacggaactacatgtggcgtaagtagaaaccaacggatgagatctattctt 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||  |||  |||| |||||  ||||||| || ||||||||||||||    
T  21779677 cggatcctctccatttcctctgaaaatggggatcggcatttcctttccttgcggaatgacacatggcataagtgaaaaccaaaggttgagatctattctt 21779776  T
Q  218 tct 220  Q
    |||    
T  21779777 tct 21779779  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 47483154 - 47483256
Alignment:
Q  118 cggatcctctccatttcctctgagaatggggatcggcatttccttgccttacggaactacatgtggcgtaagtagaaaccaacggatgagatctattctt 217  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||| |||| |||||| ||||||||| ||||| |||||||||   ||||||||||||||    
T  47483154 cggatcctctccatttcctctgaaaatggggatcgacatttccttaccttgcggaacgacatgtggcataagtggaaaccaactcttgagatctattctt 47483253  T
Q  218 tct 220  Q
    |||    
T  47483254 tct 47483256  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 47483765 - 47483663
Alignment:
Q  118 cggatcctctccatttcctctgagaatggggatcggcatttccttgccttacggaactacatgtggcgtaagtagaaaccaacggatgagatctattctt 217  Q
    ||||||||||||||||||||||| ||||||||||  ||||| ||| |||| |||||  |||| |||| ||||| |||| |||||  ||||||||||||||    
T  47483765 cggatcctctccatttcctctgaaaatggggatcaacattttcttaccttgcggaatgacatatggcataagtggaaatcaacgattgagatctattctt 47483666  T
Q  218 tct 220  Q
    |||    
T  47483665 tct 47483663  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 18983637 - 18983742
Alignment:
Q  115 gttcggatcctctccatttcctctgagaatggggatcggcatttccttgccttacggaactacatgtggcgtaagtagaaaccaacggatgagatctatt 214  Q
    |||||||||||||||||||||   |  |||| |||||| |||||| |||| || |||||| | ||||||||||||| | |||||||||  ||||| ||||    
T  18983637 gttcggatcctctccatttcccaaggaaatgtggatcgacatttcgttgcattgcggaacgatatgtggcgtaagttgtaaccaacggcagagatttatt 18983736  T
Q  215 ctttct 220  Q
    ||||||    
T  18983737 ctttct 18983742  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 42843321 - 42843221
Alignment:
Q  120 gatcctctccatttcctctgagaatggggatcggcatttccttgccttacggaactacatgtggcgtaagtagaaaccaacggatgagatctattctttc 219  Q
    |||||||||||||||||||   ||||||||||||||||||||| |||| |||||| ||| ||||| |||||  ||||||| || ||||||||||||||||    
T  42843321 gatcctctccatttcctctataaatggggatcggcatttcctttccttgcggaacgacacgtggcataagtgaaaaccaaaggttgagatctattctttc 42843222  T
Q  220 t 220  Q
    |    
T  42843221 t 42843221  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 42839436 - 42839538
Alignment:
Q  118 cggatcctctccatttcctctgagaatggggatcggcatttccttgccttacggaactacatgtggcgtaagtagaaaccaacggatgagatctattctt 217  Q
    ||||||||||| ||||||||||| |||| |||||||||||||||| |||| |||||| ||| ||||| |||||  ||||||| || ||||||| ||||||    
T  42839436 cggatcctctctatttcctctgaaaatgaggatcggcatttcctttccttgcggaacgacacgtggcataagtgaaaaccaaaggttgagatcaattctt 42839535  T
Q  218 tct 220  Q
    |||    
T  42839536 tct 42839538  T

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