View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16813_low_7 (Length: 429)
Name: NF16813_low_7
Description: NF16813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16813_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 6 - 413
Target Start/End: Complemental strand, 41572021 - 41571616
Alignment:
| Q |
6 |
gtgaaaagaattggaaccaaacagtctcgacaacttaatctctcaaattaaaaaatatcgatgaaaatagtcnnnnnnngaactagcaccgtaattttaa |
105 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
41572021 |
gtgaaaagaagtggaaccaaacagtctcgacagcttaatctctcaaattaaaaaatatcgatgaaaatagtctttttttgaactagcaccataattttaa |
41571922 |
T |
|
| Q |
106 |
aagttttagtttgtcctaatgcatcctgagattattcaaagcaatatataagtctttcattaattttaatagctagtttcataacaattttcaagaacaa |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41571921 |
aagttttagtttgtcctaatgcatc--gagattattcaaagcaatatataagtctttcattaattttaatagctattttcataacaattttcaagaacaa |
41571824 |
T |
|
| Q |
206 |
aaatgttagtttactcccaacatgttgtgaagctctatgctggaatccaacaagaagaaccaaatagaattctacccttccaaccttgtagcatccaatt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41571823 |
aaatgttagtttactcccaacatgttgtgaagctctatgctggaatccaacaagaagaaccaaatagaattctacccttccaaccttgtagcatccaatt |
41571724 |
T |
|
| Q |
306 |
ttcattcacctcaaacagaaaatcactattatatgcatcatctctcaacttacacttcaatttatctataacatgcttatccaatttcaaagacttaaac |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41571723 |
ttcattcacctcaaacagaaaatcactattatatgcatcatctctcaacttacacttcaatttatctataatctgcttatccaatttcaaagacttaaac |
41571624 |
T |
|
| Q |
406 |
ccatttcc |
413 |
Q |
| |
|
|||||||| |
|
|
| T |
41571623 |
ccatttcc |
41571616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 411
Target Start/End: Complemental strand, 41584434 - 41584035
Alignment:
| Q |
6 |
gtgaaaagaattggaaccaaacagtctcgacaacttaatctctcaaattaaaaaatatcgatgaaaatagtcnnnnnnn-gaactagcaccgtaatttta |
104 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
41584434 |
gtgaaaagaagtggaaccaaacagtctagacaacttaa--------attaaaaaatatcgatgaaaatagtctttttcttgaactagcaccataatttta |
41584343 |
T |
|
| Q |
105 |
aaagttttagtttgtcctaatgcatcctgagattattcaaagcaatatataagtctttcattaattttaatagctagtttcataacaattttcaagaaca |
204 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41584342 |
aaggttttagtttgtcctaatgcatcctgggattattcaaagcaatatataagtctttcattaattttaatagctagtttcataacaattttcaagaacg |
41584243 |
T |
|
| Q |
205 |
aaaatgttagtttactcccaacatgttgtgaagctctatgctggaatccaacaagaagaaccaaatagaattctacccttccaaccttgtagcatccaat |
304 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41584242 |
aaaatgttaatttactcccaacatgttgtgaaggtctatgctggaacccaacatgaagaaccaaatagaattctacccttccaaccttgtagcatccaat |
41584143 |
T |
|
| Q |
305 |
tttcattcacctcaaacagaaaatcactattatatgcatcatctctcaacttacacttcaatttatctataacatgcttatccaatttc-aaagacttaa |
403 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||| ||||||| |||||| ||| |
|
|
| T |
41584142 |
tttcattcacctcaaataaaaaatcactattatatgcatcatttctcaacctacccttcaatttatctataatctgcttattcaatttcaaaagacctaa |
41584043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 197 - 413
Target Start/End: Complemental strand, 41590780 - 41590564
Alignment:
| Q |
197 |
caagaacaaaaatgttagtttactcccaacatgttgtgaagctctatgctggaatccaacaagaagaaccaaatagaattctacccttccaaccttgtag |
296 |
Q |
| |
|
|||| ||| |||||||| |||||||||| | ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41590780 |
caagcacagaaatgttaatttactcccacctagttgtgaaggtctatgttggaatccaacaagaagaaccaaatagaattctacccttccaaccttgtag |
41590681 |
T |
|
| Q |
297 |
catccaattttcattcacctcaaacagaaaatcactattatatgcatcatctctcaacttacacttcaatttatctataacatgcttatccaatttcaaa |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
41590680 |
catccaattttcattcacctcaaacagaaaatcactattatatgcatcatctctcaacttacacttcaatttatttataatctgcttatccaatttcaaa |
41590581 |
T |
|
| Q |
397 |
gacttaaacccatttcc |
413 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
41590580 |
gacctaaacccatttcc |
41590564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 189 - 414
Target Start/End: Complemental strand, 41558128 - 41557903
Alignment:
| Q |
189 |
acaattttcaagaacaaaaatgttagtttactcccaacatgttgtgaagctctatgctggaatccaacaagaagaaccaaatagaattctacccttccaa |
288 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41558128 |
acaattttcaagaacaaaaatgttgatttactcccaacatattgtgaaggtctatgctggaacccaacatgaagaaccaaatagaattctacccttccaa |
41558029 |
T |
|
| Q |
289 |
ccttgtagcatccaattttcattcacctcaaacagaaaatcactattatatgcatcatctctcaacttacacttcaatttatctataacatgcttatcca |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||| || |
|
|
| T |
41558028 |
ccttgtagcatccaattttcattcacctcaaataaaaaatcactattatatgcatcatttctcaacctacccttcaatttatctataatctgcttattca |
41557929 |
T |
|
| Q |
389 |
atttcaaagacttaaacccatttcct |
414 |
Q |
| |
|
||||||||||| |||||||||||||| |
|
|
| T |
41557928 |
atttcaaagacctaaacccatttcct |
41557903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 6 - 185
Target Start/End: Complemental strand, 41591038 - 41590859
Alignment:
| Q |
6 |
gtgaaaagaattggaaccaaacagtctcgacaacttaatctctcaaattaaaaaatatcgatgaaaatagtcnnnnnnn-gaactagcaccgtaatttta |
104 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||| ||| ||||| || ||||||||||||| ||||| ||||| ||||||||||| |||||||| |
|
|
| T |
41591038 |
gtgaaaagaagtggaaccaaacactctaaacaa-ttagtctcttaatttaaaaaatatcgttgaaattagtctttttcttgaactagcaccataatttta |
41590940 |
T |
|
| Q |
105 |
aaagttttagtttgtcctaatgcatcctgagattattcaaagcaatatataagtctttcattaattttaatagctagtttc |
185 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41590939 |
aaggttttagtttgtcttaatgcatcctgagattgttcaaagcaatatataagtctttcattaattttaatagctagtttc |
41590859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University