View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16813_low_8 (Length: 428)

Name: NF16813_low_8
Description: NF16813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16813_low_8
NF16813_low_8
[»] chr3 (2 HSPs)
chr3 (7-418)||(4083131-4083548)
chr3 (329-398)||(32022360-32022429)
[»] chr4 (1 HSPs)
chr4 (181-398)||(42877559-42877776)
[»] chr8 (2 HSPs)
chr8 (209-398)||(27051646-27051835)
chr8 (37-115)||(27051471-27051549)
[»] chr7 (1 HSPs)
chr7 (329-398)||(30221962-30222031)
[»] chr5 (1 HSPs)
chr5 (329-398)||(17627858-17627927)
[»] chr2 (3 HSPs)
chr2 (329-398)||(14699317-14699386)
chr2 (334-398)||(44882891-44882954)
chr2 (335-398)||(12747232-12747295)
[»] chr1 (1 HSPs)
chr1 (335-398)||(41341546-41341609)


Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 7 - 418
Target Start/End: Original strand, 4083131 - 4083548
Alignment:
Q  7 atttggttcccacctcctctattttggatcaaatgcaatacagatggagcttctttaggcaatcctagcacttctt---gtggagggatttttagagatt 103  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  4083131 atttggttcccacctcctctattttggatcaaatgcaataccaatggagcttctttaggcaatcctagcacttcttcttgtggagggatttttagagatt 4083230  T
Q  104 ctgaaggtaatt-tttaggttgctttgcagagtttttaggtgtttcctctccctatctagctgaactttgggg--caatcagagctgtggagattgcttt 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||  || |||||||||| ||||||||||| ||  ||||||||||||| |||||||||||    
T  4083231 ctgaaggtaattgtttaggttgctttgcagagtttttaggtgtaaccactccctatctggctgaactttgtggagcaatcagagctgtcgagattgcttt 4083330  T
Q  201 tgatcatcattggagtaatctttggattgaatccgactcttccttggttgtacaagctttcaagaattctagccttattccttggcagatcagaaatagg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4083331 tgatcatcattggagtaatctttggattgaatccgactcttccttggttgtacaagctttcaagaattctagccttattccttggcagatcagaaatagg 4083430  T
Q  301 tgggatcatgcaatgtataaacttactcatatcaattgtatagttactcatatctttagggaaggtaaccaagttgcttattcccttgcaaactttggcc 400  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4083431 tgggattatgcaatgtataaacttactcatatcaattgtatagttactcatatctttagggaaggtaaccaagttgcttattcccttgcaaactttggcc 4083530  T
Q  401 taactatgagttcctttg 418  Q
    ||||||||||||| ||||    
T  4083531 taactatgagttcttttg 4083548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 32022360 - 32022429
Alignment:
Q  329 atatcaattgtatagttactcatatctttagggaaggtaaccaagttgcttattcccttgcaaactttgg 398  Q
    |||| ||||||||||||||||| || || |||||||| |||||||| ||| ||||||| |||||||||||    
T  32022360 atatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgg 32022429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 398
Target Start/End: Original strand, 42877559 - 42877776
Alignment:
Q  181 agagctgtggagattgcttttgatcatcattggagtaatctttggattgaatccgactcttccttggttgtacaagctttcaagaattctagccttattc 280  Q
    ||||| || |||| ||||| || |||| ||||||||||| | ||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||| |||    
T  42877559 agagcagttgagactgcttatgctcataattggagtaatttatggattgaatctgactcttccttggttgtgcaagctttcaacaattctagtcttgttc 42877658  T
Q  281 cttggcagatcagaaataggtgggatcatgcaatgtataaacttactcatatcaattgtatagttactcatatctttagggaaggtaaccaagttgctta 380  Q
    |||| ||| || | || || |||||  ||    ||| || |||||  ||||| ||||||||||| |||||||| ||||||||||| || ||||||||| |    
T  42877659 cttgccaggtccgtaacagatgggacaatattttgtttagacttaggcatatgaattgtatagtcactcatatttttagggaaggaaatcaagttgctga 42877758  T
Q  381 ttcccttgcaaactttgg 398  Q
    |||||| |||| ||||||    
T  42877759 ttccctcgcaagctttgg 42877776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 209 - 398
Target Start/End: Original strand, 27051646 - 27051835
Alignment:
Q  209 attggagtaatctttggattgaatccgactcttccttggttgtacaagctttcaagaattctagccttattccttggcagatcagaaataggtgggatca 308  Q
    ||||||| ||||| ||||||||||| || ||||| |||||||| ||||| || |||||||  ||| | |||||||||||  ||| ||| |||||| || |    
T  27051646 attggagcaatctgtggattgaatcagattcttctttggttgttcaagcctttaagaatttcagcttaattccttggcaagtcaaaaacaggtggaatga 27051745  T
Q  309 tgcaatgtataaacttactcatatcaattgtatagttactcatatctttagggaaggtaaccaagttgcttattcccttgcaaactttgg 398  Q
    |||||||| || ||| |   | ||  |||||||||||||||| || ||||| ||||| |||||||||| | |||||||||||||||||||    
T  27051746 tgcaatgtttagactcaaaaacatgtattgtatagttactcacatatttagagaagggaaccaagttgttgattcccttgcaaactttgg 27051835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 27051471 - 27051549
Alignment:
Q  37 aaatgcaatacagatggagcttctttaggcaatcctagcacttcttgtggagggatttttagagattctgaaggtaatt 115  Q
    ||||| |||||||||||||  |||||    ||||||||||||||||||||||| ||||| ||||| | |||||||||||    
T  27051471 aaatgtaatacagatggagtatctttgcaaaatcctagcacttcttgtggaggtattttcagagactttgaaggtaatt 27051549  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 30221962 - 30222031
Alignment:
Q  329 atatcaattgtatagttactcatatctttagggaaggtaaccaagttgcttattcccttgcaaactttgg 398  Q
    |||| ||||||||||||||||| || || |||||||| |||||||| ||| ||||||| |||||||||||    
T  30221962 atatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgg 30222031  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 17627927 - 17627858
Alignment:
Q  329 atatcaattgtatagttactcatatctttagggaaggtaaccaagttgcttattcccttgcaaactttgg 398  Q
    |||| ||||||||||||||||| || || |||||||| |||||||| ||| ||||||| |||||||||||    
T  17627927 atatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgg 17627858  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 14699317 - 14699386
Alignment:
Q  329 atatcaattgtatagttactcatatctttagggaaggtaaccaagttgcttattcccttgcaaactttgg 398  Q
    |||| ||||||||||||||| |||||| ||||||||| || ||||| ||  |||||||||||||||||||    
T  14699317 atatgaattgtatagttacttatatctatagggaagggaatcaagtagcagattcccttgcaaactttgg 14699386  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 44882891 - 44882954
Alignment:
Q  334 aattgtatagttactcatatctttagggaaggtaaccaagttgcttattcccttgcaaactttgg 398  Q
    ||||||||||||| |||||| ||||| ||||| ||||||| || |||||||||||||||||||||    
T  44882891 aattgtatagttattcatatttttagagaaggaaaccaag-tggttattcccttgcaaactttgg 44882954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 12747232 - 12747295
Alignment:
Q  335 attgtatagttactcatatctttagggaaggtaaccaagttgcttattcccttgcaaactttgg 398  Q
    |||||||||| ||||| || || | |||||| |||||||| ||| |||||||||||||||||||    
T  12747232 attgtatagtcactcacattttcaaggaaggaaaccaagtagctgattcccttgcaaactttgg 12747295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 41341546 - 41341609
Alignment:
Q  335 attgtatagttactcatatctttagggaaggtaaccaagttgcttattcccttgcaaactttgg 398  Q
    |||||||||| |||||||| ||||| ||||| |||||||| | | |||||||||||||||||||    
T  41341546 attgtatagtcactcatatatttagagaaggaaaccaagtggttgattcccttgcaaactttgg 41341609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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