View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16814_high_13 (Length: 268)
Name: NF16814_high_13
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16814_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 22 - 252
Target Start/End: Complemental strand, 12328006 - 12327776
Alignment:
| Q |
22 |
cagcatttgctatacaagcaatagttggttgtaacgtgagtgaggattatggtcctacacttaagaaagcacatcactttcttaagtcttcacaggtagt |
121 |
Q |
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| T |
12328006 |
cagcatttgctatacaagcaatagttggttgtaacgtgagtgaggattatggtcctacacttaagaaagcacatcactttcttaagtcttcacaggtagt |
12327907 |
T |
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| Q |
122 |
tgaaaacccatcaggtgattttagggcaatgtacagacacattagcaaaggagcatggacattctcaatacaagatgaaggttggcaagtttccgactgc |
221 |
Q |
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| T |
12327906 |
tgaaaacccatcaggtgattttagggcaatgtacagacacattagcaaaggagcatggacattctcaatacaagatgaaggttggcaagtttccgactgc |
12327807 |
T |
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| Q |
222 |
actgcagaagcactcaaggtacaaattagtg |
252 |
Q |
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| T |
12327806 |
actgcagaagcactcaaggtacaaattagtg |
12327776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 12294769 - 12294548
Alignment:
| Q |
22 |
cagcatttgctatacaagcaatagttggttgtaacgtgagtgaggattatggtcctacacttaagaaagcacatcactttcttaagtcttcacaggtagt |
121 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||| ||||||||| | ||||| ||| |||||||||| || |
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| T |
12294769 |
cagcattttctatacaagcaatagttggttgtaacgtaagtgaggagtatggtcgcacacttcgaaaagcacatgaatttctgaaggcttcacaggtggt |
12294670 |
T |
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| Q |
122 |
tgaaaacccatcaggtgattttagggcaatgtacagacacattagcaaaggagcatggacattctcaatacaagatgaaggttggcaagtttccgactgc |
221 |
Q |
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| T |
12294669 |
tgataacccatcaggtgattttagggcaatgtacagacacattagcaaaggagcatggacattttcaatacaagatgaaggttggcaagcctctgactgc |
12294570 |
T |
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| Q |
222 |
actgcagaagcactcaaggtac |
243 |
Q |
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| T |
12294569 |
actgcagtaggactcaaggtac |
12294548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 35182949 - 35182730
Alignment:
| Q |
22 |
cagcatttgctatacaagcaatagttggttgtaacgtgagtgaggattatggtcctacacttaagaaagcacatcactttcttaagtcttcacaggtagt |
121 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||| |||||||||| |||| || ||| | ||||||||||| |
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| T |
35182949 |
cagcatttgctatacaagcaatacttgcttgtaacgtgagtgaagagtatggtcctacactttggaaagcacatgacttcctgaaggcctcacaggtagt |
35182850 |
T |
|
| Q |
122 |
tgaaaacccatcaggtgattttagggcaatgtacagacacattagcaaaggagcatggacattctcaatacaagatgaaggttggcaagtttccgactgc |
221 |
Q |
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|||||| ||||| ||||| || | ||||||||||||||||| |||||||| | |||||||||||||| || || ||||||||||||| || |||||| |
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| T |
35182849 |
tgaaaatccatccggtgagttcaaagcaatgtacagacacatatgcaaaggatcgtggacattctcaatgcatgaccaaggttggcaagtctctgactgc |
35182750 |
T |
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| Q |
222 |
actgcagaagcactcaaggt |
241 |
Q |
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|| ||||||| ||||||||| |
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| T |
35182749 |
accgcagaaggactcaaggt |
35182730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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