View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16814_high_18 (Length: 220)

Name: NF16814_high_18
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16814_high_18
NF16814_high_18
[»] chr3 (15 HSPs)
chr3 (77-203)||(29516617-29516743)
chr3 (1-77)||(29513381-29513457)
chr3 (91-195)||(17371355-17371459)
chr3 (85-186)||(29634471-29634572)
chr3 (78-169)||(1886357-1886446)
chr3 (85-184)||(29787792-29787891)
chr3 (90-186)||(11162585-11162681)
chr3 (96-203)||(17266851-17266956)
chr3 (79-186)||(20409556-20409661)
chr3 (77-179)||(29788037-29788136)
chr3 (91-185)||(1886205-1886299)
chr3 (77-187)||(20409311-20409421)
chr3 (77-143)||(29515748-29515814)
chr3 (91-196)||(55390488-55390593)
chr3 (87-186)||(25155915-25156013)
[»] chr8 (11 HSPs)
chr8 (77-203)||(22842855-22842981)
chr8 (107-203)||(32123812-32123908)
chr8 (77-203)||(32108437-32108560)
chr8 (103-186)||(12504428-12504511)
chr8 (90-144)||(26140748-26140802)
chr8 (77-186)||(12784721-12784830)
chr8 (102-186)||(29370555-29370637)
chr8 (91-167)||(10205154-10205230)
chr8 (79-186)||(12784966-12785072)
chr8 (102-203)||(24629493-24629594)
chr8 (106-186)||(26140494-26140572)
[»] chr5 (22 HSPs)
chr5 (77-203)||(16417643-16417769)
chr5 (77-186)||(6998562-6998671)
chr5 (79-186)||(16417889-16417994)
chr5 (88-186)||(34595768-34595867)
chr5 (77-186)||(11477443-11477552)
chr5 (78-188)||(36311447-36311557)
chr5 (90-186)||(10976365-10976461)
chr5 (77-184)||(25360119-25360224)
chr5 (90-186)||(31488537-31488633)
chr5 (79-186)||(25360265-25360370)
chr5 (79-185)||(7575889-7575993)
chr5 (77-186)||(19748523-19748630)
chr5 (126-186)||(31238508-31238568)
chr5 (79-186)||(34595526-34595631)
chr5 (93-188)||(23228167-23228262)
chr5 (77-186)||(26604148-26604255)
chr5 (90-186)||(10976134-10976228)
chr5 (93-169)||(8531748-8531824)
chr5 (80-203)||(19575678-19575799)
chr5 (77-146)||(7575645-7575711)
chr5 (79-186)||(19748380-19748484)
chr5 (77-144)||(37397305-37397370)
[»] chr6 (14 HSPs)
chr6 (77-203)||(19243333-19243459)
chr6 (77-203)||(20244721-20244851)
chr6 (77-203)||(22138705-22138835)
chr6 (79-169)||(24560129-24560217)
chr6 (77-203)||(24560354-24560480)
chr6 (89-188)||(21864322-21864421)
chr6 (79-184)||(19243108-19243211)
chr6 (127-186)||(22962031-22962090)
chr6 (139-186)||(23607796-23607843)
chr6 (127-186)||(23826303-23826362)
chr6 (126-182)||(21864689-21864745)
chr6 (103-178)||(3097310-3097383)
chr6 (77-113)||(3386291-3386327)
chr6 (77-113)||(11117242-11117278)
[»] chr1 (11 HSPs)
chr1 (89-188)||(27574789-27574886)
chr1 (79-186)||(39899686-39899791)
chr1 (78-162)||(22923299-22923383)
chr1 (77-146)||(27800259-27800328)
chr1 (91-186)||(48706462-48706557)
chr1 (78-186)||(15471989-15472097)
chr1 (90-188)||(27259843-27259939)
chr1 (128-188)||(11788739-11788799)
chr1 (79-186)||(19262200-19262305)
chr1 (89-185)||(26089138-26089234)
chr1 (129-195)||(16279038-16279104)
[»] chr7 (21 HSPs)
chr7 (77-187)||(23553938-23554048)
chr7 (79-186)||(16886289-16886394)
chr7 (93-203)||(5281762-5281872)
chr7 (77-188)||(12083615-12083724)
chr7 (79-186)||(28066571-28066676)
chr7 (91-186)||(41934900-41934995)
chr7 (102-188)||(11826460-11826546)
chr7 (104-188)||(3380326-3380410)
chr7 (79-186)||(16651132-16651237)
chr7 (79-186)||(17625492-17625597)
chr7 (83-186)||(23553701-23553802)
chr7 (127-186)||(29656278-29656337)
chr7 (102-203)||(150647-150748)
chr7 (93-146)||(18150044-18150097)
chr7 (90-186)||(26926849-26926943)
chr7 (77-203)||(28067604-28067728)
chr7 (77-183)||(36337988-36338092)
chr7 (102-186)||(3925280-3925361)
chr7 (90-162)||(7066984-7067054)
chr7 (157-186)||(45377958-45377987)
chr7 (83-186)||(12083251-12083352)
[»] chr4 (10 HSPs)
chr4 (77-186)||(44101045-44101154)
chr4 (92-188)||(20758598-20758694)
chr4 (92-188)||(20764989-20765085)
chr4 (79-186)||(23124321-23124426)
chr4 (92-188)||(25145204-25145300)
chr4 (77-184)||(12227029-12227134)
chr4 (104-188)||(24576584-24576668)
chr4 (79-186)||(44100803-44100908)
chr4 (88-203)||(24075756-24075871)
chr4 (78-187)||(23620527-23620633)
[»] scaffold0015 (2 HSPs)
scaffold0015 (83-186)||(22203-22306)
scaffold0015 (79-186)||(22443-22547)
[»] chr2 (11 HSPs)
chr2 (78-186)||(12763824-12763930)
chr2 (77-186)||(20529301-20529408)
chr2 (77-181)||(5305200-5305303)
chr2 (102-186)||(28276337-28276421)
chr2 (90-186)||(20988973-20989067)
chr2 (89-146)||(28746100-28746157)
chr2 (79-186)||(23282613-23282718)
chr2 (78-146)||(26617109-26617177)
chr2 (103-186)||(26617256-26617337)
chr2 (104-188)||(31991557-31991641)
chr2 (92-188)||(18879182-18879278)
[»] scaffold0027 (2 HSPs)
scaffold0027 (103-186)||(37008-37089)
scaffold0027 (78-183)||(37131-37236)
[»] scaffold0294 (1 HSPs)
scaffold0294 (79-119)||(1332-1372)


Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 77 - 203
Target Start/End: Original strand, 29516617 - 29516743
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    |||||||||| ||||||||||| | ||||||||||||  ||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||   |||||    
T  29516617 aatttgcaagcctctttgaaaactaaaaagaatgaagataacacaacacatgtattctaccaaatcaactttataggttttcacattgaatttcctcata 29516716  T
Q  177 taagatgagtcacgacaaaaaagaatg 203  Q
    ||||||||||||| |||||||||||||    
T  29516717 taagatgagtcacaacaaaaaagaatg 29516743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 29513381 - 29513457
Alignment:
Q  1 aacacatcaacacaacaaaaagaattatatcagttaagaacatcaaagttgttgtaaaaaggaaacaatattcacca 77  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29513381 aacacatcaacacaaccaaaagaattatatcagttaataacatcaaagttgttgtaaaaaggaaacaatattcacca 29513457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 91 - 195
Target Start/End: Complemental strand, 17371459 - 17371355
Alignment:
Q  91 tttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtcacg 190  Q
    |||||||| | ||||| |||||  |||||||||| ||||||| ||| ||||||||||||| |||| ||||||||||||   ||||||||||||||| |||    
T  17371459 tttgaaaactcaaaagtatgaaaagaacacaacacatgtattctacaaaatcaactttataggttatcacatcgaatttgctcatataagatgagtaacg 17371360  T
Q  191 acaaa 195  Q
    |||||    
T  17371359 acaaa 17371355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 29634471 - 29634572
Alignment:
Q  85 agtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatga 184  Q
    ||||||||| |||| | |||||||||||| |||  ||||| ||||||| |||||||||||||||||  ||| |||||||||||  ||||||||| |||||    
T  29634471 agtctctttaaaaactcaaaagaatgaagagaatgcaacacatgtattctaccaaatcaactttatatgttatcacatcgaatattttcatataggatga 29634570  T
Q  185 gt 186  Q
    ||    
T  29634571 gt 29634572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 1886446 - 1886357
Alignment:
Q  78 atttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattc 169  Q
    |||||||| ||| |||||||| | |||||||||||| |||||||||||  ||||| ||||||||||||| |||  |||||||||||||||||    
T  1886446 atttgcaactctttttgaaaagtcaaaagaatgaagagaacacaacat--gtattttaccaaatcaactatatatgttttcacatcgaattc 1886357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 184
Target Start/End: Original strand, 29787792 - 29787891
Alignment:
Q  85 agtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatga 184  Q
    ||||| |||||||| | |||| ||||||| ||||||| || ||||||| |||| |||||||| ||| |||| ||||||| ||||| ||||||||||||||    
T  29787792 agtctttttgaaaactcaaaataatgaagagaacacatcacatgtattctaccgaatcaactatataggttctcacatcaaattccttcatataagatga 29787891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 11162585 - 11162681
Alignment:
Q  90 ctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    ||||||||||| |||||||||||| ||| |||||| ||||||| ||   |||||||| ||| ||||||||||| |||| | |||||||| |||||||    
T  11162585 ctttgaaaattcaaaagaatgaagagaatacaacacatgtattctatataatcaactgtataggttttcacatggaatcccttcatatatgatgagt 11162681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 17266851 - 17266956
Alignment:
Q  96 aaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtcacgacaaa 195  Q
    ||||| |||||||||||| |||||  ||| |||||||  |||||||||||| |||  ||||||||||||||| |||| ||||| ||||||| |||||| |    
T  17266851 aaattcaaaagaatgaagagaaca--acacatgtattccaccaaatcaactatatatgttttcacatcgaatccttttatataggatgagtaacgacata 17266948  T
Q  196 aaagaatg 203  Q
    || |||||    
T  17266949 aaggaatg 17266956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 20409661 - 20409556
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    ||||||||||||||| |||| | | |||||||||| |||||||||  ||||||| | || |||||||| |||  ||||||||||||||||| ||| ||||    
T  20409661 tttgcaagtctctttcaaaactcacaagaatgaagagaacacaac--atgtattctgccgaatcaactatataagttttcacatcgaattccttcgtata 20409564  T
Q  179 agatgagt 186  Q
     |||||||    
T  20409563 ggatgagt 20409556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 29788136 - 29788037
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    |||||||||||||||||||||| | |||||||||||| ||||||    | |||||| |||| |||||||| |||  ||||||||||||||||| ||| ||    
T  29788136 aatttgcaagtctctttgaaaactcaaaagaatgaagagaacacg---tttgtattctaccgaatcaactatataagttttcacatcgaattccttcgta 29788040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 1886205 - 1886299
Alignment:
Q  91 tttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgag 185  Q
    |||||||| | |||||||| ||| |||||||||| ||||||| || |||||||||| |||  ||| ||||||||||| | |||||||| ||||||    
T  1886205 tttgaaaagtcaaaagaataaagagaacacaacacatgtattctagcaaatcaactgtataagttctcacatcgaatcccttcatataggatgag 1886299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 20409311 - 20409421
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    ||||||| ||||||||| ||||   |||||||||||| |||||||||| ||||||| |||  |||||||| |||  ||| |||||| |||| | ||||||    
T  20409311 aatttgctagtctctttcaaaacacaaaagaatgaagagaacacaacacatgtattctactgaatcaactatataagttatcacattgaatcccttcata 20409410  T
Q  177 taagatgagtc 187  Q
    || ||||||||    
T  20409411 taggatgagtc 20409421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 29515748 - 29515814
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatca 143  Q
    |||||||||| ||||||||||| | ||||||||||||  ||||||||| ||||||| ||||||||||    
T  29515748 aatttgcaagcctctttgaaaactaaaaagaatgaagataacacaacacatgtattctaccaaatca 29515814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 55390488 - 55390593
Alignment:
Q  91 tttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtcacg 190  Q
    |||||||| | |||||||||| | ||||| |||| |||||||  ||  |||||||| ||| |||||||||||||||||   |||||||||| ||||||||    
T  55390488 tttgaaaactcaaaagaatgaggagaacataacacatgtatttaactgaatcaactatataggttttcacatcgaatttcctcatataagacgagtcacg 55390587  T
Q  191 acaaaa 196  Q
    | ||||    
T  55390588 agaaaa 55390593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 25155915 - 25156013
Alignment:
Q  87 tctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    |||||||||||| | |||| ||||||| |||  || || |||| || ||||||||||||| ||| |||| |||||| |||| | ||||||||||||||||    
T  25155915 tctctttgaaaactcaaaataatgaagagaatgcatcacatgt-ttctaccaaatcaactatataggttctcacatagaatcccttcatataagatgagt 25156013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 203
Target Start/End: Original strand, 22842855 - 22842981
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    ||||||||||||||||| |||| | |||||||||||| |||||| |||  |||||| ||||||||||||| |||  ||| ||||||||||| | ||||||    
T  22842855 aatttgcaagtctctttcaaaactcaaaagaatgaagtgaacacgacaattgtattctaccaaatcaactatataagttctcacatcgaatcccttcata 22842954  T
Q  177 taagatgagtcacgacaaaaaagaatg 203  Q
    ||||||||||||  |||||||||||||    
T  22842955 taagatgagtcatcacaaaaaagaatg 22842981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 32123908 - 32123812
Alignment:
Q  107 aatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtcacgacaaaaaagaatg 203  Q
    ||||||| ||||||||||  |||||||||||||||||||| ||| |||| ||||||||||| | |||||| | ||||| ||| ||||||||||||||    
T  32123908 aatgaagagaacacaacaattgtattataccaaatcaactatataggttatcacatcgaatcccttcatacaggatgattcatgacaaaaaagaatg 32123812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 203
Target Start/End: Original strand, 32108437 - 32108560
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    ||||||||||||||||||||| || |||||||||||| |||||||   | |||||||||| ||||||||| |||  ||| || ||||||||||  |||||    
T  32108437 aatttgcaagtctctttgaaactt-aaaagaatgaagtgaacacat--tttgtattatactaaatcaactatatatgttctctcatcgaattccctcata 32108533  T
Q  177 taagatgagtcacgacaaaaaagaatg 203  Q
    ||||||| || | |||||||| |||||    
T  32108534 taagatgggtaatgacaaaaaggaatg 32108560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 103 - 186
Target Start/End: Original strand, 12504428 - 12504511
Alignment:
Q  103 aaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    ||||||||||| |||||||||| ||||||| ||  ||||||||| |||  ||||||||||||||||| |||| ||| |||||||    
T  12504428 aaagaatgaagagaacacaacacatgtattctattaaatcaactatataagttttcacatcgaattccttcacataggatgagt 12504511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 26140802 - 26140748
Alignment:
Q  90 ctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaa 144  Q
    ||||||||||| |||||||||||| |||||||||| ||||||| |||||||||||    
T  26140802 ctttgaaaattcaaaagaatgaagagaacacaacacatgtattctaccaaatcaa 26140748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 12784721 - 12784830
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    ||||||||||||| ||| |||| | |||||||||||| |||||  ||| ||||||| |||||| |||  | ||   ||| ||||||||||||| ||||||    
T  12784721 aatttgcaagtctttttcaaaactcaaaagaatgaagagaacatgacacatgtattctaccaagtcagttatacatgttctcacatcgaattccttcata 12784820  T
Q  177 taagatgagt 186  Q
    ||||||||||    
T  12784821 taagatgagt 12784830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 29370637 - 29370555
Alignment:
Q  102 aaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    |||||||||||| |||||||   | |||||| ||||||||||||| ||| |||||||||||||||||  ||| ||||||||||||    
T  29370637 aaaagaatgaagagaacacat--tttgtattctaccaaatcaactatataggttttcacatcgaattgcttcgtataagatgagt 29370555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 10205230 - 10205154
Alignment:
Q  91 tttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaat 167  Q
    |||||||| | |||||||||||| ||||||||||   ||||| ||||||||||||| |||  |||||||||||||||    
T  10205230 tttgaaaactcaaaagaatgaagagaacacaacactagtattctaccaaatcaactatatatgttttcacatcgaat 10205154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 12785072 - 12784966
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaag-aatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatat 177  Q
    ||||||||||||||| |||| | ||||| ||||||| ||| |||||||  ||||| |||| |||||||| |||  ||||||||||| ||||  ||| |||    
T  12785072 tttgcaagtctctttcaaaactcaaaaggaatgaagagaatacaacat--gtattctaccgaatcaactatatacgttttcacatcaaatttcttcgtat 12784975  T
Q  178 aagatgagt 186  Q
    |||||||||    
T  12784974 aagatgagt 12784966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 24629493 - 24629594
Alignment:
Q  102 aaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtcacgacaaaaaagaa 201  Q
    |||||| ||||| ||||||||||  |||||| ||||||||||||| |||   ||||||||| ||||||  ||||||||||| |||  | ||| |||||||    
T  24629493 aaaagagtgaagagaacacaacacttgtattctaccaaatcaactatatatattttcacatggaattccctcatataagattagtagctacataaaagaa 24629592  T
Q  202 tg 203  Q
    ||    
T  24629593 tg 24629594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 26140494 - 26140572
Alignment:
Q  106 gaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    |||||||| |||||||||||  ||||| |||| ||| | || |||| ||||||||||||||||| ||  ||||||||||||    
T  26140494 gaatgaagagaacacaacat--gtattttaccgaattagctatatttgttttcacatcgaattcctttgtataagatgagt 26140572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 203
Target Start/End: Original strand, 16417643 - 16417769
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    |||||||||| |||||| |||| | |||||||||||| |||||||||| ||||||| ||||||||||||  |||  ||| |||||||||||||  |||||    
T  16417643 aatttgcaagcctctttaaaaactcaaaagaatgaagagaacacaacacatgtattctaccaaatcaacaatataagttctcacatcgaattccctcata 16417742  T
Q  177 taagatgagtcacgacaaaaaagaatg 203  Q
    |||||||||||| |||||||| |||||    
T  16417743 taagatgagtcatgacaaaaaggaatg 16417769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 6998562 - 6998671
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    |||||||||| || |||||||| | |||||||||||| | ||| |||| ||||||| ||||||||||||||||| ||||||||||||||| ||  |||||    
T  6998562 aatttgcaagactatttgaaaactcaaaagaatgaagagcacataacacatgtattctaccaaatcaactttataggttttcacatcgaactccatcata 6998661  T
Q  177 taagatgagt 186  Q
    ||||||||||    
T  6998662 taagatgagt 6998671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 16417994 - 16417889
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    |||||||||||||||||||| | |||||||||||| |||||||||  ||||||| |||||||| |||| ||| |||||| |||| |||||| ||| ||||    
T  16417994 tttgcaagtctctttgaaaactcaaaagaatgaagagaacacaac--atgtattttaccaaattaactatataggtttttacattgaattccttcgtata 16417897  T
Q  179 agatgagt 186  Q
    ||||||||    
T  16417896 agatgagt 16417889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 186
Target Start/End: Complemental strand, 34595867 - 34595768
Alignment:
Q  88 ctctttgaaaattgaaaagaatgaagggaacacaaca-tatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    ||||||||||| | |||||||||||| || ||||||| | |||||| ||||||||||||| |||  ||||||||||||||||| ||||||||||||||||    
T  34595867 ctctttgaaaactcaaaagaatgaagagagcacaacactttgtattctaccaaatcaactatataagttttcacatcgaattccttcatataagatgagt 34595768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 11477443 - 11477552
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    ||||||| |||||||||||||| | |||||||||||| ||||||| || ||||||| |||| |||||||  ||| |||| |||||| |||||| ||| ||    
T  11477443 aatttgccagtctctttgaaaactcaaaagaatgaagagaacacatcacatgtattctaccgaatcaacaatataggttctcacattgaattcattcgta 11477542  T
Q  177 taagatgagt 186  Q
    ||||||||||    
T  11477543 taagatgagt 11477552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 78 - 188
Target Start/End: Original strand, 36311447 - 36311557
Alignment:
Q  78 atttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatat 177  Q
    |||||||| | || ||||||| | || ||||||||| |||||||||| ||||||| ||| ||||||||| |||  ||| | ||||||||||| |||||||    
T  36311447 atttgcaactttcgttgaaaagtcaatagaatgaagagaacacaacacatgtattctacaaaatcaactatatatgttatgacatcgaattccttcatat 36311546  T
Q  178 aagatgagtca 188  Q
    |||||||||||    
T  36311547 aagatgagtca 36311557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 10976461 - 10976365
Alignment:
Q  90 ctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    ||||||||||| ||||||||||||  |||||||||  |||||| ||||||||||||| ||| |||| ||||||||||||   |||||| ||||||||    
T  10976461 ctttgaaaattcaaaagaatgaagataacacaacacttgtattctaccaaatcaactatataggttatcacatcgaatttcctcatattagatgagt 10976365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 25360119 - 25360224
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    ||||||||||||| |||||||||| |||| ||||||| |||||  ||| ||||||||||| |||||| || ||| |||||||||| ||||||   |||||    
T  25360119 aatttgcaagtctgtttgaaaattcaaaacaatgaagagaaca--acacatgtattatacaaaatcatctatataggttttcacaacgaatttcctcata 25360216  T
Q  177 taagatga 184  Q
    ||||||||    
T  25360217 taagatga 25360224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 31488633 - 31488537
Alignment:
Q  90 ctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    ||||||| ||| |||||||||||| |||||||||| ||||||| ||| |||||||   ||| |||| |||||||||||||  |||||||||||||||    
T  31488633 ctttgaatattcaaaagaatgaagagaacacaacacatgtattctacaaaatcaagaatataggttatcacatcgaattccctcatataagatgagt 31488537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 25360370 - 25360265
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    ||||||||||| |||||||| | |||||||||||| |||||||||  ||||||| | | |||||| || ||| ||||||||||||||||||  |  ||||    
T  25360370 tttgcaagtctgtttgaaaactcaaaagaatgaagagaacacaac--atgtattctgcaaaatcatctatataggttttcacatcgaattcccttgtata 25360273  T
Q  179 agatgagt 186  Q
    ||||||||    
T  25360272 agatgagt 25360265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 7575993 - 7575889
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    ||||||||||||||| |||| | | |||||||||| |||||||||  ||||||| |  |||||||||| ||| |||| ||||||||||||| |||  |||    
T  7575993 tttgcaagtctctttcaaaactcacaagaatgaagagaacacaac--atgtattttgtcaaatcaactatataggttctcacatcgaattccttcgcata 7575896  T
Q  179 agatgag 185  Q
    |||||||    
T  7575895 agatgag 7575889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 19748630 - 19748523
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    ||||||||||||| |||||||| | |||||||||||| ||  |||||| ||||||| ||| |||||| || ||| | |||| ||||| |||||  |||||    
T  19748630 aatttgcaagtctgtttgaaaactcaaaagaatgaagaga--acaacacatgtattctacaaaatcatctatatagatttttacatcaaattccctcata 19748533  T
Q  177 taagatgagt 186  Q
    ||||||||||    
T  19748532 taagatgagt 19748523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 31238568 - 31238508
Alignment:
Q  126 atgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    ||||||| |||| |||||||||||| |||||||||||||||||   |||||||||||||||    
T  31238568 atgtattctaccgaatcaactttataggttttcacatcgaattaactcatataagatgagt 31238508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 34595526 - 34595631
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    |||||||| || |||||||| | |||||||| ||| || |||||| |  ||||||||||||||||||| ||| |||||||||| | ||||| ||  ||||    
T  34595526 tttgcaagcctttttgaaaagtcaaaagaattaagagagcacaactt--gtattataccaaatcaactatataggttttcacaacaaattcctttgtata 34595623  T
Q  179 agatgagt 186  Q
    ||||||||    
T  34595624 agatgagt 34595631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 23228167 - 23228262
Alignment:
Q  93 tgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtca 188  Q
    |||||| | |||||||| ||| |||||||||| || |||| || |||||||||| |||   || |||||||||||||  |||||||||||||||||    
T  23228167 tgaaaactcaaaagaattaagagaacacaacacatttattctatcaaatcaactatataaattctcacatcgaattccctcatataagatgagtca 23228262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 26604148 - 26604255
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    |||||||||||||||||||||| | |||| ||| ||| |||||||   | |||||| ||||||||||| | ||   ||| ||||||||||||| ||||||    
T  26604148 aatttgcaagtctctttgaaaactcaaaacaattaagagaacaca--ttttgtattctaccaaatcaattataaatgttctcacatcgaattccttcata 26604245  T
Q  177 taagatgagt 186  Q
    ||| ||||||    
T  26604246 taatatgagt 26604255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 10976134 - 10976228
Alignment:
Q  90 ctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    ||||||||| | |||||||||||| ||||||||| |  ||||| ||||||||||||| |||  |||||| ||||||||||  |  ||||||||||||    
T  10976134 ctttgaaaagtcaaaagaatgaagagaacacaactt--gtattttaccaaatcaactatatatgttttcgcatcgaattcccttgtataagatgagt 10976228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 8531748 - 8531824
Alignment:
Q  93 tgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattc 169  Q
    |||||| | |||||||||||| |||||||||| || |||| || | |||||||||||| | || |||||||||||||    
T  8531748 tgaaaagtcaaaagaatgaagagaacacaacacatatattctatcgaatcaactttatagattctcacatcgaattc 8531824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 19575799 - 19575678
Alignment:
Q  80 ttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataa 179  Q
    |||||||||||| |||||| | |||| ||||||| |||||||   | ||||||||| |||||||||| ||   | | ||||||| ||||| |||||||||    
T  19575799 ttgcaagtctctatgaaaactcaaaataatgaagagaacacat--tttgtattatatcaaatcaactatacatgctctcacatcaaattcattcatataa 19575702  T
Q  180 gatgagtcacgacaaaaaagaatg 203  Q
    ||||||| | |||| ||| |||||    
T  19575701 gatgagtaaggacataaaggaatg 19575678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 7575645 - 7575711
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaact 146  Q
    ||||||||||||||||| |||| | ||||||||||   |||||||||| ||||||| ||||||| |||||    
T  7575645 aatttgcaagtctctttcaaaactcaaaagaatga---gaacacaacacatgtattctaccaaaccaact 7575711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 19748380 - 19748484
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    ||||||||||| ||  |||| | ||||||||||||| ||||||||||  ||||| | | |||||| || ||| ||||||||||||||||||  |  ||||    
T  19748380 tttgcaagtctgttcaaaaactcaaaagaatgaagg-aacacaacat--gtattctgcaaaatcagctatataggttttcacatcgaattcccttgtata 19748476  T
Q  179 agatgagt 186  Q
    ||||||||    
T  19748477 agatgagt 19748484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 37397370 - 37397305
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaa 144  Q
    ||||||||||||||||| |||| | |||||||| ||| ||||||  || ||||||| |||||||||||    
T  37397370 aatttgcaagtctctttcaaaactcaaaagaataaagagaacac--cacatgtattctaccaaatcaa 37397305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 19243459 - 19243333
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    |||||||||| || | | |||||| |||||||||||| |||||||||| ||||||| |||||||| |||||||| |||| ||||||| ||||   |||||    
T  19243459 aatttgcaagactatctaaaaattcaaaagaatgaagagaacacaacacatgtattctaccaaattaactttataggttatcacatcaaattgcctcata 19243360  T
Q  177 taagatgagtcacgacaaaaaagaatg 203  Q
    |||||||||||| |||||||| |||||    
T  19243359 taagatgagtcatgacaaaaaggaatg 19243333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 20244851 - 20244721
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaac----tttattggttttcacatcgaattcttt 172  Q
    |||||||| ||||||||||||| | | |||||||||| |||||||||| ||||||||||||||||||||    | |||  ||| | |||||||||||  |    
T  20244851 aatttgcacgtctctttgaaaactcagaagaatgaagagaacacaacacatgtattataccaaatcaactatatatataagttcttacatcgaattccct 20244752  T
Q  173 catataagatgagtcacgacaaaaaagaatg 203  Q
    |||||||  |||||||||||||||| |||||    
T  20244751 catataaattgagtcacgacaaaaaggaatg 20244721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 22138835 - 22138705
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaac----tttattggttttcacatcgaattcttt 172  Q
    |||||||| ||||||||||||| | | |||||||||| |||||||||| ||||||||||||||||||||    | |||  ||| | |||||||||||  |    
T  22138835 aatttgcacgtctctttgaaaactcagaagaatgaagagaacacaacacatgtattataccaaatcaactatatatataagttcttacatcgaattccct 22138736  T
Q  173 catataagatgagtcacgacaaaaaagaatg 203  Q
    |||||||  |||||||||||||||| |||||    
T  22138735 catataaattgagtcacgacaaaaaggaatg 22138705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 24560129 - 24560217
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattc 169  Q
    ||||||||||| ||| |||| | |||||||||||| |||||||||||  ||||| ||||||||||||| ||| ||||||||||||||||||    
T  24560129 tttgcaagtctttttcaaaactcaaaagaatgaagagaacacaacat--gtattttaccaaatcaactatataggttttcacatcgaattc 24560217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 24560480 - 24560354
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    ||||||||||| | ||| |||| | || ||||||||| |||||||||| |||||||||| |||| ||||||||| |||| |||||| |||  | ||||||    
T  24560480 aatttgcaagtttgttttaaaactcaacagaatgaagagaacacaacacatgtattatagcaaaacaactttataggttatcacattgaaccccttcata 24560381  T
Q  177 taagatgagtcacgacaaaaaagaatg 203  Q
    || |||||||||| ||| ||| |||||    
T  24560380 taggatgagtcaccacataaaggaatg 24560354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 21864322 - 21864421
Alignment:
Q  89 tctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtca 188  Q
    |||||||||| | |||||||||||| | |||||| | |||||||||| |||||||||| |||   || ||||||||||||   |||||||||||||||||    
T  21864322 tctttgaaaagtcaaaagaatgaagaggacacaataaatgtattatatcaaatcaactatataaattctcacatcgaattacctcatataagatgagtca 21864421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 19243108 - 19243211
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    |||||||| || |||||||| | |||||||| ||| |||||||||||  ||||| ||||||||||| | ||| |||||||||||  ||||| ||| ||||    
T  19243108 tttgcaagactatttgaaaactcaaaagaataaagagaacacaacat--gtattttaccaaatcaattatataggttttcacattcaattccttcgtata 19243205  T
Q  179 agatga 184  Q
    ||||||    
T  19243206 agatga 19243211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 22962031 - 22962090
Alignment:
Q  127 tgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    ||||||||| ||||| |||| ||| |||| |||||||||||||| |||||||||||||||    
T  22962031 tgtattatatcaaataaactatataggttctcacatcgaattctctcatataagatgagt 22962090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 23607843 - 23607796
Alignment:
Q  139 aatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    |||||||| ||| |||||||||||||||||| ||||||||||||||||    
T  23607843 aatcaactatataggttttcacatcgaattccttcatataagatgagt 23607796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 23826362 - 23826303
Alignment:
Q  127 tgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    ||||||||| ||||| |||| ||| |||| |||||||||||||| |||||||||||||||    
T  23826362 tgtattatatcaaataaactatataggttctcacatcgaattctctcatataagatgagt 23826303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 21864745 - 21864689
Alignment:
Q  126 atgtattataccaaatcaactttattggttttcacatcgaattctttcatataagat 182  Q
    ||||||| || |||||||| ||||| |||||||||||||||||| ||| ||||||||    
T  21864745 atgtattctagcaaatcaagtttataggttttcacatcgaattccttcgtataagat 21864689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 3097383 - 3097310
Alignment:
Q  103 aaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    ||||||||||| ||| |||||||  | ||| || |||||||||||||| || ||||||||||||||| ||| ||||    
T  3097383 aaagaatgaagagaatacaacat--gcattctagcaaatcaactttatagggtttcacatcgaattccttcgtata 3097310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 3386327 - 3386291
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaag 113  Q
    |||||||||||||||||||||| | ||||||||||||    
T  3386327 aatttgcaagtctctttgaaaactcaaaagaatgaag 3386291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 11117242 - 11117278
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaag 113  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  11117242 aatttgcaagtctctatgaaaattcaaaagaatgaag 11117278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 27574789 - 27574886
Alignment:
Q  89 tctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtca 188  Q
    |||||||||| | |||||||||||| |||||  ||| ||||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  27574789 tctttgaaaagtcaaaagaatgaagagaaca--acacatgtattctagcaaatcaactttataggttttcacatcgaattctctcatataagatgagtca 27574886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 39899791 - 39899686
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    |||||||||||||||||||| | |||||||||||| |||||||   | |||||||||| ||||||||| ||||| || ||||||||||||| ||| ||||    
T  39899791 tttgcaagtctctttgaaaactcaaaagaatgaagagaacacat--tttgtattatacaaaatcaactatattgattctcacatcgaattccttcgtata 39899694  T
Q  179 agatgagt 186  Q
    ||||||||    
T  39899693 agatgagt 39899686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 22923299 - 22923383
Alignment:
Q  78 atttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacat 162  Q
    |||||||| | |||||||||||| |||||||||||| |||||||||| ||||||| |||  |||||||||||| |||| ||||||    
T  22923299 atttgcaaatttctttgaaaattcaaaagaatgaagagaacacaacacatgtattctactgaatcaactttataggttatcacat 22923383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 27800328 - 27800259
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaact 146  Q
    ||||||||||||||||| |||||| |||||||||||| ||| |||||| ||||||| |||| ||||||||    
T  27800328 aatttgcaagtctctttcaaaattcaaaagaatgaagagaatacaacacatgtattctaccgaatcaact 27800259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 48706462 - 48706557
Alignment:
Q  91 tttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    |||||||||  |||||||||||| |||||||| | ||||||| |||| |||||| | ||| |||| | |||||||||||  |||||||||||||||    
T  48706462 tttgaaaatccaaaagaatgaagagaacacaatacatgtattctaccgaatcaaatatataggttataacatcgaattccctcatataagatgagt 48706557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 15472097 - 15471989
Alignment:
Q  78 atttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatat 177  Q
    |||||||| | |||||||||| | |||||||||||| || |||| |  ||||||| || ||||| |||| |||  ||||||||||||||| | |||||||    
T  15472097 atttgcaactttctttgaaaagtcaaaagaatgaagagagcacaccgcatgtattctagcaaattaactatataagttttcacatcgaatcccttcatat 15471998  T
Q  178 aagatgagt 186  Q
    | |||||||    
T  15471997 aggatgagt 15471989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 27259939 - 27259843
Alignment:
Q  90 ctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtca 188  Q
    ||||||||| | |||||||||||| |||||  ||| ||||||| |||  |||||||| |||  ||||||||||||||| | |||||||| |||||||||    
T  27259939 ctttgaaaactcaaaagaatgaagagaaca--acaaatgtattctacataatcaactatatatgttttcacatcgaatcccttcatataggatgagtca 27259843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 11788739 - 11788799
Alignment:
Q  128 gtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtca 188  Q
    ||||||||||||||||||| | |  ||| ||||||||||| | ||||||||||||||||||    
T  11788739 gtattataccaaatcaactatgtatgttatcacatcgaatcccttcatataagatgagtca 11788799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 19262305 - 19262200
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    ||||||||| | |||||||| | |||||||||||| |||||||||  ||||||| | |  |||||||| ||| |||||||||||| ||||| ||| | ||    
T  19262305 tttgcaagtttgtttgaaaactcaaaagaatgaagagaacacaac--atgtattctgcagaatcaactatataggttttcacatcaaattcattcgttta 19262208  T
Q  179 agatgagt 186  Q
     |||||||    
T  19262207 ggatgagt 19262200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 26089234 - 26089138
Alignment:
Q  89 tctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgag 185  Q
    |||| ||||| | |||||||||||  |||||||||| | ||||| || |||||||||| |||  ||| ||||||||||| | |||||||| ||||||    
T  26089234 tcttggaaaagtcaaaagaatgaaaagaacacaacacaggtattctagcaaatcaactatataagttctcacatcgaatcccttcatataggatgag 26089138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 16279038 - 16279104
Alignment:
Q  129 tattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtcacgacaaa 195  Q
    |||| ||||||||||||| ||| ||||||||||||||||||  | |||||| |||||| | ||||||    
T  16279038 tattctaccaaatcaactatataggttttcacatcgaattccctaatataatatgagttatgacaaa 16279104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 23554048 - 23553938
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    ||||||||||| | |||||||| | |||||||| |||||||||||||| ||||||| || |||||||||| ||| |||| ||||||| |||||  |||||    
T  23554048 aatttgcaagtgtgtttgaaaactcaaaagaataaagggaacacaacacatgtattctagcaaatcaactatataggttatcacatcaaattccctcata 23553949  T
Q  177 taagatgagtc 187  Q
    |||||||||||    
T  23553948 taagatgagtc 23553938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 16886394 - 16886289
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    ||||||||||| |||||||| | |||||||| ||| |||||||||||  ||||| ||||||||||||| ||| |||||||||||||||||| ||  ||||    
T  16886394 tttgcaagtctgtttgaaaactcaaaagaataaagagaacacaacat--gtattttaccaaatcaactatataggttttcacatcgaattcctttgtata 16886297  T
Q  179 agatgagt 186  Q
    ||||||||    
T  16886296 agatgagt 16886289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 5281762 - 5281872
Alignment:
Q  93 tgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtcacgac 192  Q
    |||||| | |||||||| ||| |||||||||| ||||||| ||| ||||||||| |||  ||| ||||||||||||| ||||||||| ||||||||  ||    
T  5281762 tgaaaactcaaaagaattaagagaacacaacacatgtattctacaaaatcaactatatatgttatcacatcgaattccttcatataaaatgagtcatcac 5281861  T
Q  193 aaaaaagaatg 203  Q
    ||||| |||||    
T  5281862 aaaaaggaatg 5281872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 12083724 - 12083615
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    ||||||||||||| |||||||| | |||||||||||| |||||  ||| ||||||| | | |||||| || |||  |||||||||||||||||  |||||    
T  12083724 aatttgcaagtctgtttgaaaactcaaaagaatgaagagaaca--acacatgtattcttcaaaatcatctatatacgttttcacatcgaattccctcata 12083627  T
Q  177 taagatgagtca 188  Q
    ||||||||||||    
T  12083626 taagatgagtca 12083615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 28066571 - 28066676
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    ||||||||||| |||||||| | |||||||| ||| |||||||||||  ||||| | | ||||||||| ||| ||||||||||| |||||| ||||||||    
T  28066571 tttgcaagtctatttgaaaactcaaaagaataaagagaacacaacat--gtattctgcaaaatcaactatataggttttcacattgaattccttcatata 28066668  T
Q  179 agatgagt 186  Q
     |||||||    
T  28066669 ggatgagt 28066676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 41934900 - 41934995
Alignment:
Q  91 tttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    |||||||| | |||||||||||| ||||||||||  || ||| ||||||||||||| |||  |||||||||||||||||  || ||||||||||||    
T  41934900 tttgaaaactcaaaagaatgaagagaacacaacagttgcattctaccaaatcaactatatatgttttcacatcgaattccctcgtataagatgagt 41934995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 188
Target Start/End: Complemental strand, 11826546 - 11826460
Alignment:
Q  102 aaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtca 188  Q
    |||||||||||| |||||||||||||||||| |||  |||||||| |||  ||| ||||||||||||   |||||||||||||||||    
T  11826546 aaaagaatgaagagaacacaacatatgtattttacataatcaactatatatgttatcacatcgaattacctcatataagatgagtca 11826460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 3380326 - 3380410
Alignment:
Q  104 aagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtca 188  Q
    |||||||||| |||||||||| ||||||| ||| |||| |||| |||  ||| |||||||||||||  |||||||||| ||||||    
T  3380326 aagaatgaagagaacacaacacatgtattctacaaaataaactatatatgttatcacatcgaattccctcatataagacgagtca 3380410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 16651237 - 16651132
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    ||||||||||||||||| || | |||||||||||   ||||||   | |||| ||||||||||||||| |||  ||| ||||||||||||| ||||||||    
T  16651237 tttgcaagtctctttgataactcaaaagaatgaatataacacat--tttgtagtataccaaatcaactatataagttctcacatcgaattccttcatata 16651140  T
Q  179 agatgagt 186  Q
    ||| ||||    
T  16651139 agacgagt 16651132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 17625597 - 17625492
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    ||||||||||||||||| || | |||||||||||   ||||||   | |||| ||||||||||||||| |||  ||| ||||||||||||| ||||||||    
T  17625597 tttgcaagtctctttgataactcaaaagaatgaatataacacat--tttgtagtataccaaatcaactatataagttctcacatcgaattccttcatata 17625500  T
Q  179 agatgagt 186  Q
    ||| ||||    
T  17625499 agacgagt 17625492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 23553701 - 23553802
Alignment:
Q  83 caagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagat 182  Q
    |||||||||||||||| | |||| ||| ||| || |||| |||  | ||| |||||||||||||  ||  ||||||||||||||||||||| ||||||||    
T  23553701 caagtctctttgaaaactcaaaataataaagagagcacatcat--gcattttaccaaatcaactaaatatgttttcacatcgaattctttcgtataagat 23553798  T
Q  183 gagt 186  Q
    ||||    
T  23553799 gagt 23553802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 29656337 - 29656278
Alignment:
Q  127 tgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    |||||| |||| |||||||| ||| |||| ||||||||||||| ||||||||||||||||    
T  29656337 tgtattctacctaatcaactatataggttctcacatcgaattccttcatataagatgagt 29656278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 150748 - 150647
Alignment:
Q  102 aaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtcacgacaaaaaagaa 201  Q
    |||||||| ||| |||||||||| ||||||| ||| ||||||| | |||  ||| |||||||||||||  ||||||||||  |||||  ||||||| |||    
T  150748 aaaagaataaagagaacacaacacatgtattctacaaaatcaattatatatgttatcacatcgaattccctcatataagacaagtcatcacaaaaatgaa 150649  T
Q  202 tg 203  Q
    ||    
T  150648 tg 150647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 18150097 - 18150044
Alignment:
Q  93 tgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaact 146  Q
    |||||| | |||||||||||| |||||||||||||||||| ||| |||||||||    
T  18150097 tgaaaagtcaaaagaatgaagagaacacaacatatgtattctacaaaatcaact 18150044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 26926943 - 26926849
Alignment:
Q  90 ctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    ||||||||| | ||||||| |||| ||||||||||| |  ||| |||  ||||||||  || |||||||||||||||||||||| |||| |||||||    
T  26926943 ctttgaaaagtcaaaagaacgaagagaacacaacattt--attctacataatcaactacataggttttcacatcgaattctttcgtatatgatgagt 26926849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 28067728 - 28067604
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    ||||||||||| | ||| |||| | |||||||||||| |||||  ||| ||||||  ||| |||||| || ||| ||||||||||| ||||||  | |||    
T  28067728 aatttgcaagtttgtttaaaaactcaaaagaatgaagagaaca--acacatgtatcctacaaaatcatctatataggttttcacattgaattcccttata 28067631  T
Q  177 taagatgagtcacgacaaaaaagaatg 203  Q
    |||||||| |||  ||||||| |||||    
T  28067630 taagatgaatcatcacaaaaatgaatg 28067604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 36337988 - 36338092
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    |||||| || |||||||||||| | |||||||||||| |||||||   | ||||||  |||||| ||||| ||| |||| |||||| ||||||  |||||    
T  36337988 aatttgtaactctctttgaaaactcaaaagaatgaagtgaacaca--ttttgtattcaaccaaaccaactatataggttctcacattgaattccctcata 36338085  T
Q  177 taagatg 183  Q
    |||||||    
T  36338086 taagatg 36338092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 3925361 - 3925280
Alignment:
Q  102 aaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    |||||||||||| ||||||||  | |||||| ||||||||||||| |||  |||| ||||||||||||  |||||||||| ||||    
T  3925361 aaaagaatgaagagaacacaa--tttgtattctaccaaatcaactatatatgttt-cacatcgaattcgctcatataagaagagt 3925280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 7066984 - 7067054
Alignment:
Q  90 ctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacat 162  Q
    ||||||||| | |||||||||||| |||||||||   |||||| ||||||||||||| |||  ||||||||||    
T  7066984 ctttgaaaagtcaaaagaatgaagagaacacaac--ttgtattttaccaaatcaactatatatgttttcacat 7067054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 45377987 - 45377958
Alignment:
Q  157 tcacatcgaattctttcatataagatgagt 186  Q
    ||||||||||||||||||||||||||||||    
T  45377987 tcacatcgaattctttcatataagatgagt 45377958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 12083251 - 12083352
Alignment:
Q  83 caagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagat 182  Q
    ||||||| ||||||||   |||||||||||| ||||||||||| ||| ||  |  ||||||  | ||| |||||||||||||||||  ||| ||||||||    
T  12083251 caagtctgtttgaaaacccaaaagaatgaagagaacacaacatgtgttttgca--aaatcagttatataggttttcacatcgaatttcttcgtataagat 12083348  T
Q  183 gagt 186  Q
    ||||    
T  12083349 gagt 12083352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 44101154 - 44101045
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    ||||||||||||||||| |||| | |||||||||||| |||||||||| |||||||||||| |||||||| ||| |||| || |||||||| | || |||    
T  44101154 aatttgcaagtctctttcaaaactcaaaagaatgaagagaacacaacacatgtattataccgaatcaactatataggttatcgcatcgaatccctttata 44101055  T
Q  177 taagatgagt 186  Q
    || |||||||    
T  44101054 taggatgagt 44101045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 20758598 - 20758694
Alignment:
Q  92 ttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtca 188  Q
    ||||||| | |||||||||||| |||||||||| ||||||| ||| ||||||||| |||  ||| |||||||||||||  |||||||||||||||||    
T  20758598 ttgaaaagtcaaaagaatgaagagaacacaacacatgtattctacaaaatcaactctataagttatcacatcgaattccctcatataagatgagtca 20758694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 20764989 - 20765085
Alignment:
Q  92 ttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtca 188  Q
    ||||||| | |||||||||||| |||||||||| ||||||| ||| ||||||||| |||  ||| |||||||||||||  |||||||||||||||||    
T  20764989 ttgaaaagtcaaaagaatgaagagaacacaacacatgtattctacaaaatcaactctataagttatcacatcgaattccctcatataagatgagtca 20765085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 23124321 - 23124426
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    |||| |||||| |||||||| | |||| ||||||| |||||  ||| ||||||| ||| |||||| || ||| ||||||||||||||||||| |||||||    
T  23124321 tttgtaagtctgtttgaaaacttaaaataatgaagagaaca--acacatgtattctacaaaatcatctatataggttttcacatcgaattctctcatata 23124418  T
Q  179 agatgagt 186  Q
    ||||||||    
T  23124419 agatgagt 23124426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 25145300 - 25145204
Alignment:
Q  92 ttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtca 188  Q
    ||||||| | |||||||||||| |||||||| | ||||||| ||| ||||||||||||| |||| | ||||||||||   |||||||||||||||||    
T  25145300 ttgaaaagtcaaaagaatgaagagaacacaatacatgtattctacaaaatcaactttataggttataacatcgaatttcctcatataagatgagtca 25145204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 12227029 - 12227134
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    ||||||||||||||||| |||| | ||  |||||||| ||||||||||| |||||| ||||||||||||| |||  ||| |||||||||||   ||||||    
T  12227029 aatttgcaagtctctttaaaaactcaa--gaatgaagagaacacaacatttgtattctaccaaatcaactatataagttctcacatcgaatctcttcata 12227126  T
Q  177 taagatga 184  Q
    || |||||    
T  12227127 taggatga 12227134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 24576584 - 24576668
Alignment:
Q  104 aagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtca 188  Q
    |||||||||| |||||||||||||||||| ||| ||||||||| |||  ||| ||||||| |||||  |||||||||| ||||||    
T  24576584 aagaatgaagagaacacaacatatgtattctacaaaatcaactatatatgttatcacatcaaattccctcatataagacgagtca 24576668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 44100803 - 44100908
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    ||||||||||| ||| |||| | | |||||||||| ||| ||||  |||||||||| || |||||||| |||  ||| ||||||||||||| ||| ||||    
T  44100803 tttgcaagtctatttcaaaacttacaagaatgaagagaaaacaa--tatgtattatgccgaatcaactatataagttctcacatcgaattccttcgtata 44100900  T
Q  179 agatgagt 186  Q
    ||||||||    
T  44100901 agatgagt 44100908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 24075871 - 24075756
Alignment:
Q  88 ctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtc 187  Q
    |||| |||||| | ||||||||||||  ||||||||| ||||||| ||  ||||||||| |||   || ||||||||||||| ||| |||| ||||||||    
T  24075871 ctctctgaaaagtcaaaagaatgaagaaaacacaacacatgtattctaaaaaatcaactatataaattctcacatcgaattccttcttatacgatgagtc 24075772  T
Q  188 acgacaaaaaagaatg 203  Q
    |  ||||||| |||||    
T  24075771 atcacaaaaaggaatg 24075756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 23620527 - 23620633
Alignment:
Q  78 atttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatat 177  Q
    ||||||||| | ||||||||| | |||||| | ||| |||||||||||  ||||||| |  |||||||| |||  ||| |||||||||||||| ||||||    
T  23620527 atttgcaagcccctttgaaaagtcaaaagatt-aagagaacacaacat--gtattatgcagaatcaactatatatgttatcacatcgaattctctcatat 23620623  T
Q  178 aagatgagtc 187  Q
    |||| |||||    
T  23620624 aagacgagtc 23620633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 22203 - 22306
Alignment:
Q  83 caagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagat 182  Q
    ||||||||||| |||| | |||||||||||| |||| ||||| ||||||| ||||||||| ||| ||   ||| ||||||||||||| ||||||||||||    
T  22203 caagtctctttcaaaactcaaaagaatgaagagaacgcaacacatgtattctaccaaatctactctacatgttctcacatcgaattccttcatataagat 22302  T
Q  183 gagt 186  Q
    ||||    
T  22303 gagt 22306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 22547 - 22443
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    ||||||||| ||||| |||| | | |||| ||||| |||||||||||  |||||||  | |||||||| |||  ||| ||||||||||||| ||| ||||    
T  22547 tttgcaagtatctttcaaaaatcacaaga-tgaagagaacacaacat--gtattatgtcgaatcaactatataagttctcacatcgaattccttcgtata 22451  T
Q  179 agatgagt 186  Q
    ||||||||    
T  22450 agatgagt 22443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 12763824 - 12763930
Alignment:
Q  78 atttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatat 177  Q
    ||||||||| ||||||||||| | |||||||||||| |||||||||  ||||||| ||| ||||||||| |||  |||||||||||||||||  |  |||    
T  12763824 atttgcaagactctttgaaaagtcaaaagaatgaagagaacacaac--atgtattttacaaaatcaactatatatgttttcacatcgaattcccttgtat 12763921  T
Q  178 aagatgagt 186  Q
    |||||||||    
T  12763922 aagatgagt 12763930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 20529301 - 20529408
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    ||||| |||||||||||||||| | |||| |||| || |||||||   | |||||| |||| |||||||| ||| |||| ||||||||||||| ||||||    
T  20529301 aatttacaagtctctttgaaaactcaaaataatgtagagaacacat--tttgtattctaccgaatcaactatataggttctcacatcgaattccttcata 20529398  T
Q  177 taagatgagt 186  Q
    ||||||||||    
T  20529399 taagatgagt 20529408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 5305200 - 5305303
Alignment:
Q  77 aatttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcata 176  Q
    ||||||||| |||||||||||| | ||||||||||||  |||||||||  ||||||||||  |||| ||| ||| |||| |||||||||||||  |||||    
T  5305200 aatttgcaactctctttgaaaactcaaaagaatgaagaaaacacaacacttgtattatactgaatc-actatataggttatcacatcgaattccctcata 5305298  T
Q  177 taaga 181  Q
    |||||    
T  5305299 taaga 5305303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 28276337 - 28276421
Alignment:
Q  102 aaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    |||||||||||| |||||||||| ||||||| |||| ||| |||| | | ||||||||||| ||||||  |||||||||||||||    
T  28276337 aaaagaatgaagagaacacaacacatgtattctaccgaattaactctttaggttttcacattgaattccctcatataagatgagt 28276421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 20989067 - 20988973
Alignment:
Q  90 ctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    ||||||||||| |||| ||||||| |||||  ||| ||||||| |||| |||||||||||| |||| ||||||| ||| | |||||||| |||||||    
T  20989067 ctttgaaaattcaaaataatgaagagaaca--acacatgtattctaccgaatcaactttataggttatcacatcaaatcccttcatataggatgagt 20988973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 28746100 - 28746157
Alignment:
Q  89 tctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaact 146  Q
    |||||||||||| |||||||||||| |||||||||| ||||||| || ||||||||||    
T  28746100 tctttgaaaattcaaaagaatgaagagaacacaacacatgtattctatcaaatcaact 28746157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 23282613 - 23282718
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatata 178  Q
    |||||||||||||||||||| | | |||||||||| |||||||||||  ||||| |  | ||||| || |||  ||||||||||||||||| ||| ||||    
T  23282613 tttgcaagtctctttgaaaactcacaagaatgaagagaacacaacat--gtattttgtcgaatcatctatatatgttttcacatcgaattccttcgtata 23282710  T
Q  179 agatgagt 186  Q
     |||||||    
T  23282711 ggatgagt 23282718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 26617109 - 26617177
Alignment:
Q  78 atttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaact 146  Q
    |||||||| | |||||||||| | |||||||||||| |||||||||| ||||||| || ||||||||||    
T  26617109 atttgcaactttctttgaaaagtcaaaagaatgaagagaacacaacacatgtattctagcaaatcaact 26617177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 26617337 - 26617256
Alignment:
Q  103 aaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    ||||||||||| |||||||||||  ||||| ||||||||||||| |||  ||||||||||||||||| ||  |||| |||||||    
T  26617337 aaagaatgaagagaacacaacat--gtattttaccaaatcaactatatatgttttcacatcgaattcctttttataggatgagt 26617256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 31991557 - 31991641
Alignment:
Q  104 aagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtca 188  Q
    ||||||||||  ||||||||| ||||||| ||| ||||||||| |||  ||| |||||||||||||  |||||||||| ||||||    
T  31991557 aagaatgaagataacacaacacatgtattctacaaaatcaactatatatgttatcacatcgaattccctcatataagacgagtca 31991641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 18879278 - 18879182
Alignment:
Q  92 ttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagtca 188  Q
    ||||||| | |||||||||||| ||||||| || ||||||| ||| ||||||||| |||   || ||||||||||||   ||||||| |||||||||    
T  18879278 ttgaaaagtcaaaagaatgaagagaacacagcacatgtattctacaaaatcaactatataaattctcacatcgaattacctcatatacgatgagtca 18879182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 186
Target Start/End: Original strand, 37008 - 37089
Alignment:
Q  103 aaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatataagatgagt 186  Q
    ||||||||||| |||||||||||  ||||| ||||||||||||| |||  ||||||||||||||||| || ||||| |||||||    
T  37008 aaagaatgaagagaacacaacat--gtattttaccaaatcaactatatatgttttcacatcgaattcctttatataggatgagt 37089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 37236 - 37131
Alignment:
Q  78 atttgcaagtctctttgaaaattgaaaagaatgaagggaacacaacatatgtattataccaaatcaactttattggttttcacatcgaattctttcatat 177  Q
    |||||||| | |||||||||| | |||||||||||| |||||||||| |||| || || |||||||||| ||   ||| ||||||||||| | |||||||    
T  37236 atttgcaactttctttgaaaagtcaaaagaatgaagagaacacaacacatgtgttctagcaaatcaactataaaagttctcacatcgaatcccttcatat 37137  T
Q  178 aagatg 183  Q
    | ||||    
T  37136 aggatg 37131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 1332 - 1372
Alignment:
Q  79 tttgcaagtctctttgaaaattgaaaagaatgaagggaaca 119  Q
    ||||||||||||||||| || | ||||||||||||||||||    
T  1332 tttgcaagtctctttgataaatcaaaagaatgaagggaaca 1372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University