View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16814_high_2 (Length: 619)
Name: NF16814_high_2
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16814_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 248 - 604
Target Start/End: Complemental strand, 2182242 - 2181887
Alignment:
| Q |
248 |
ggcatatagttttccctagcatccctctacctctaactattgaaatatctttaacatatgctatccttcatactaatgctttaacagaacttcgccgcac |
347 |
Q |
| |
|
||||||| ||||||||| ||||| ||| |||||||||||||| |||||||||||||||| ||||||||| ||||||||||| | ||| |||| | ||| |
|
|
| T |
2182242 |
ggcatatggttttcccttgcatcgctcgacctctaactattgtaatatctttaacatattctatccttcgtactaatgcttctatagatcttcttcacac |
2182143 |
T |
|
| Q |
348 |
atgtccaaaccccgtaagataagattctaccatcttttctacaatataagtaatgccactccacttttctctctaaaactttcattcttatccctatctt |
447 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||||||||||||||||||| || |||||| ||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
2182142 |
atgtccaaacac-gtaagacaagattctaccatcttttctacaatataagcaaagccactacacttttctctttaagactttcattcttatccctatctt |
2182044 |
T |
|
| Q |
448 |
atcttatgtgtcaattcattcattataacgtcaatatcactatctcaaagaaatcatagcaatttgcaatagggttcctgtgcaagctagtaatatcttg |
547 |
Q |
| |
|
|||||||||| ||| |||||| ||||||| |||||||| |||||||||||||||||| |||||| ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
2182043 |
atcttatgtgacaactcattcgttataacatcaatatctctatctcaaagaaatcatgacaattttcaataggattcttgtgcaagctagtaatatcttg |
2181944 |
T |
|
| Q |
548 |
tattttgaagagagaaaattacaatcttctaataatttcacgtgtgttggagattct |
604 |
Q |
| |
|
|| |||||| |||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
2181943 |
taatttgaatagagaaaattacaatcttataataatttcacgtgtgtcggagattct |
2181887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 2182627 - 2182517
Alignment:
| Q |
7 |
ttccaacctaagggcagatatctgctgagttcagacaatcgttgaaaagaaatgtaaatcttctgtaatgtaaatgatagatatttgatcatctatatgt |
106 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2182627 |
ttccaacctaagggcagatatctgttgagttcagacaatcgttgaaaagaaatgtaaatcttctataatgtaaatgatagatatttgatcatctatatgt |
2182528 |
T |
|
| Q |
107 |
tacgaagacaa |
117 |
Q |
| |
|
||||||||||| |
|
|
| T |
2182527 |
tacgaagacaa |
2182517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 2182420 - 2182358
Alignment:
| Q |
168 |
acattagcccattcacaccggtaataatttgagagaatagaattattgaacgtaaccacgtgt |
230 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
2182420 |
acattagcccgtcgacaccggtaataatttgagggaatagaattattgaatgtaaccacgtgt |
2182358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 50269858 - 50269908
Alignment:
| Q |
183 |
caccggtaataatttgagagaatagaattattgaacgtaaccacgtgtgtc |
233 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| ||| |||| |||||| |
|
|
| T |
50269858 |
caccggtaataatttgagaaaattgaattattgaatgtacccacatgtgtc |
50269908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University