View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16814_low_1 (Length: 701)
Name: NF16814_low_1
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16814_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 463 - 693
Target Start/End: Complemental strand, 41786825 - 41786604
Alignment:
| Q |
463 |
aacatgacgtatgccaatttatgaaagtataaacaactagatgatgtgtgtgtgagtatgacatttgatacaatcaacatatatattataattaatctaa |
562 |
Q |
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| T |
41786825 |
aacatgacgtatgccaatttatgaaagtataaacaactagatgatgtgtgtgtgagtatgacatttgatacaatcaacatatatattataattaatctaa |
41786726 |
T |
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| Q |
563 |
cattgcgcaagacttaagtataagcaaacagatgagaaattgataggaaattatagagtgaataaattaaataaattaaacaaatgtagaaattgtttat |
662 |
Q |
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| T |
41786725 |
cattgcgcaagacttaagtataagcaaacagaggagaaattgataggaaattatagagtgaataaat---------taaacaaatgtagaaattgtttat |
41786635 |
T |
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| Q |
663 |
atatttatgattgataagaagatgaaatagg |
693 |
Q |
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| T |
41786634 |
atatttatgattgataagaagatgaaatagg |
41786604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 41787540 - 41787380
Alignment:
| Q |
15 |
cataggactagttgcaaatgcatgtggctctacagtaacttcagtatgtccattcttgaggaagaatcatatcattctggacttctgttgctgcttttgt |
114 |
Q |
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| T |
41787540 |
cataggactagttgcaaatgcatgtggctctacagtaacttcaatatgtccattcttgaggaagaatcatatcattctggacttctgttgctgcttttgt |
41787441 |
T |
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| Q |
115 |
tgactggtgattctcaagtgaaaacataccttccctatggttcaaaacaatatctgcaaat |
175 |
Q |
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| T |
41787440 |
tgactggtgattctcaagtgaaaacataccttccctatggttcaaaacaagatctgcaaat |
41787380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 176 - 352
Target Start/End: Complemental strand, 41787356 - 41787184
Alignment:
| Q |
176 |
agcaaattgattcacaaaaaatagatgaaaatcaaattagatagttttatattcataatcaataactgtcagttcaatactatagaactagttggcgaca |
275 |
Q |
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| T |
41787356 |
agcaaattgattcacaaaaaatagatgaaaatcaaattagatagttttatattcataatcaataactgtcagttcaatactatagaactagttggcgaca |
41787257 |
T |
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| Q |
276 |
aattgctagttgatagcaccaagtatttggactgttggaataaattgcatgcagcagtatcgaaaagcaaaattgga |
352 |
Q |
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| T |
41787256 |
aattgctagttgatagtaccaagtatttggaccgttggaataaat----tgcagcagtatcgaaaagcaaaattgga |
41787184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 377 - 405
Target Start/End: Complemental strand, 41787180 - 41787152
Alignment:
| Q |
377 |
aattaatcatagagattagtactaactac |
405 |
Q |
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| T |
41787180 |
aattaatcatagagattagtactaactac |
41787152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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