View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16814_low_13 (Length: 315)
Name: NF16814_low_13
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16814_low_13 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 92 - 315
Target Start/End: Complemental strand, 2183023 - 2182801
Alignment:
| Q |
92 |
tgatttctcccaattcttctacacagtcaaatgcaatggattgagcattaatattgcaggaataaatcatgatatcttttaacagtttgaaccggaaagt |
191 |
Q |
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| T |
2183023 |
tgatttctcctaattcttttagacagtcaaatgcaatggattgaacatttatattgcaggaataaatcatgaaatctgttaacagcttgaacctaaaagt |
2182924 |
T |
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| Q |
192 |
tgacacttacttcggttggagtcattgttccgggaatatataaaatttcaccaccttgaacataatccaaaatatcctgataaacaagttcaagcaaaac |
291 |
Q |
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| T |
2182923 |
tgacacttacttcggttggagtcattgttccgggaatgtataaaatgtcaccaccttgaacataattcaaaatatcctgataaagaagtt-aaacaaagc |
2182825 |
T |
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| Q |
292 |
tgcatattggtaagacatcctagt |
315 |
Q |
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|||||||||||||||||||||||| |
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| T |
2182824 |
tgcatattggtaagacatcctagt |
2182801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 3574441 - 3574329
Alignment:
| Q |
187 |
aaagttgacacttacttcggttggagtcattgttccgggaatatataaaatttcaccaccttgaacataatccaaaatatcctgataaacaagttcaagc |
286 |
Q |
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|||||||| |||| |||| |||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||| || | |
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| T |
3574441 |
aaagttgaaactttcttcagttggagtcattgtccgggggatatataaaatttcaccaccttgaacatagtccaaaatatattgat-aacaagttaaaac |
3574343 |
T |
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| Q |
287 |
aaaactgcatattg |
300 |
Q |
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| T |
3574342 |
aagactgcatattg |
3574329 |
T |
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