View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16814_low_15 (Length: 282)
Name: NF16814_low_15
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16814_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 4677176 - 4676913
Alignment:
| Q |
1 |
tgattataacatgaaacaacctcaaacattaaattgagccaataattgtcctatccttcgaaagtcaaatacaaattatttttgtacgtagtatatatga |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4677176 |
tgattataacataaaacaacctcaaacattaaattgagcccataattgtcctatccttcgaaagtcaaatacaaattatttttgtacgtagtatatatga |
4677077 |
T |
|
| Q |
101 |
aggtgaaggcctctctggttccatacatnnnnnnnccaagcagagtagcaatcatgatcaaaagatggagaaacaatttgaagaagaagaaaccaaacaa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4677076 |
aggtgaaggcctctctggttccatacataaaaaaaccaagcagagtagcaatcatgatcaaaagatggagaaacaatttgaagaagaagaaaccaaacaa |
4676977 |
T |
|
| Q |
201 |
cagcagcaacatagcaaacaaatggcaacaactcagtggtgaaaatcattggataggtctatta |
264 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4676976 |
cagcagcagcatagcaaacaaatggcaacaactcagtggtgaaaatcattggataggtctatta |
4676913 |
T |
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