View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16814_low_17 (Length: 268)
Name: NF16814_low_17
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16814_low_17 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 15885018 - 15885252
Alignment:
| Q |
16 |
ccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggtt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15885018 |
ccatcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaagaagagttcgcgtcttt |
15885117 |
T |
|
| Q |
116 |
ggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgag |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15885118 |
ggggaagggagaatcaattgctggaggttttgacataggtgaactgtttccttcatctaaatggattcaacttgtttccggtttgaggcctaaacttgag |
15885217 |
T |
|
| Q |
216 |
aggttgcatagacgaattgatcatatactggaaaa |
250 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
15885218 |
aggttgcatagacgtattgatcgaatactagaaaa |
15885252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 68 - 242
Target Start/End: Complemental strand, 12637978 - 12637804
Alignment:
| Q |
68 |
ggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttcct |
167 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || ||| | ||||| || ||||||||| ||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
12637978 |
ggctgcgtttggaaacaaatgcaaaggccaagaacagctcgtatcgttggcaaatggagaatcagttggaggaggttttgacataggtgaattgtttcct |
12637879 |
T |
|
| Q |
168 |
tcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatata |
242 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| ||||| ||||| |||||||||| |||||||| |||| |
|
|
| T |
12637878 |
tcagctaaatggcttcaactagtttctggtttcaggtctaaaattgaggtattgcatagacaaattgatcttata |
12637804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 12611013 - 12610796
Alignment:
| Q |
33 |
cttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttggggaagggagaatcaa |
132 |
Q |
| |
|
||||||||||||||||| ||| ||||| || | |||||||||||||| | |||| |||||| | ||||||||| | | | || | |||||||||| |
|
|
| T |
12611013 |
cttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagagaagagtttggatctattggagatggagaatcaa |
12610914 |
T |
|
| Q |
133 |
ttgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaat |
232 |
Q |
| |
|
||||||||||||||||||| | |||| | ||||||||||| ||||||||||||| |||||| ||||||||||||||||| |||||||||||||| | ||| |
|
|
| T |
12610913 |
ttgcaggaggttttgacatagctgaattatttccttcagcgaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgcataggcaaat |
12610814 |
T |
|
| Q |
233 |
tgatcatatactggaaaa |
250 |
Q |
| |
|
|||||| ||||| ||||| |
|
|
| T |
12610813 |
tgatcaaatactagaaaa |
12610796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 63160 - 62929
Alignment:
| Q |
19 |
tcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttggg |
118 |
Q |
| |
|
||||| |||||||||||||| || || ||| | || ||||| |||| | |||||||||||| |||||||||||| ||||||| |||| |||| ||||| |
|
|
| T |
63160 |
tcaacatcactgaacttgtacttacaacaatgatttctatcatttcaagggctgcgtttggcgacaaatgcaaagcccaagaacagtttgcgtcattggg |
63061 |
T |
|
| Q |
119 |
gaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagagg |
218 |
Q |
| |
|
|| || |||||||| |||||||||||| || |||| | ||||||||||| ||||||||||||||| | | | | |||||||||||| ||||| |
|
|
| T |
63060 |
aaatataggatcaattggaggaggttttgaaataattgaattatttccttcagccaaatggcttcaacttatatttaatcaaaggcctaaacttaagagg |
62961 |
T |
|
| Q |
219 |
ttgcatagacgaattgatcatatactggaaaa |
250 |
Q |
| |
|
|||||||||| | ||||||| ||||| ||||| |
|
|
| T |
62960 |
ttgcatagacaacttgatcagatacttgaaaa |
62929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 5626 - 5744
Alignment:
| Q |
132 |
attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaa |
231 |
Q |
| |
|
|||||||||||||||||| | || || ||||||| || ||||||||||| |||| ||| |||||||||||||||| ||||||| | | ||| ||| || |
|
|
| T |
5626 |
attgcaggaggttttgacttgggagatttgtttccatctgctaaatggctacaacaagttactggtttgaggcctaagcttgagatgcttcatcgacaaa |
5725 |
T |
|
| Q |
232 |
ttgatcatatactggaaaa |
250 |
Q |
| |
|
|||||| ||||| ||||| |
|
|
| T |
5726 |
ctgatcaaatacttgaaaa |
5744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 23146811 - 23146706
Alignment:
| Q |
133 |
ttgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaat |
232 |
Q |
| |
|
||||||| ||||||||| | || || ||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| || |
|
|
| T |
23146811 |
ttgcagggggttttgacttgggagatttgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaac |
23146712 |
T |
|
| Q |
233 |
tgatca |
238 |
Q |
| |
|
|||||| |
|
|
| T |
23146711 |
tgatca |
23146706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 23039909 - 23039831
Alignment:
| Q |
160 |
tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatca |
238 |
Q |
| |
|
||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| || |||||| |
|
|
| T |
23039909 |
tgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatca |
23039831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 23033743 - 23033659
Alignment:
| Q |
132 |
attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga |
216 |
Q |
| |
|
||||||||||||||| || | || || |||||||||| ||||||||||||||| |||| ||||| | |||||||| ||||||| |
|
|
| T |
23033743 |
attgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaacatgttactggtattaggcctaagcttgaga |
23033659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University