View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16814_low_20 (Length: 245)
Name: NF16814_low_20
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16814_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 34141018 - 34141217
Alignment:
| Q |
25 |
ctagcagcttcatcaagcctctgcctgagactcaaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaa |
124 |
Q |
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| T |
34141018 |
ctagcagcttcatcaagcctctgcctgagactcaaagggactccatggtttgtgactttaaagaatccccacgctttgcatgcacttccaatctccttga |
34141117 |
T |
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| Q |
125 |
ctaagctttcaatagcagatggatttggaacttcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttgg |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34141118 |
ctaagctttcaatagcagatggatttggaacttcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttgg |
34141217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 34137356 - 34137554
Alignment:
| Q |
26 |
tagcagcttcatcaagcctctgcctgagactcaaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaac |
125 |
Q |
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|||||||||||||||| |||||||| |||||| ||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||| || |
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| T |
34137356 |
tagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcacttccaatttccttcac |
34137455 |
T |
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| Q |
126 |
taagctttcaatagcagatggatttggaacttcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttgg |
224 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||| |||| ||||||||||| |
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| T |
34137456 |
taagttttcaatatcagatggatttggaacttcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttgg |
34137554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 34133444 - 34133643
Alignment:
| Q |
25 |
ctagcagcttcatcaagcctctgcctgagactcaaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaa |
124 |
Q |
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|||| |||||| ||||| |||||||| |||||||||||||||||||||||||| |||| |||||| |||||||| |||| |||||||||||||||||| | |
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| T |
34133444 |
ctagaagcttcctcaagtctctgccttagactcaaagggactccatggtttgtgacttgaaagaaaccccactccttgcttgcacttccaatctccttca |
34133543 |
T |
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| Q |
125 |
ctaagctttcaatagcagatggatttggaacttcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttgg |
224 |
Q |
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| ||| |||||||| ||||||||||||||||| ||| ||| | ||||||||||| |||||||| ||||| ||||||||||| |||| |||||||||||| |
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| T |
34133544 |
ccaagttttcaatatcagatggatttggaactgcatggtgaagaattggagagaggtcaatttcgggaattcctttggcttcgatgatggagagttttgg |
34133643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 34127171 - 34127370
Alignment:
| Q |
25 |
ctagcagcttcatcaagcctctgcctgagactcaaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaa |
124 |
Q |
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||||||||||||||||| || ||||| | |||||||||||| ||||||||||||||| |||||| ||||| || ||||||||||||||||||| ||| | |
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| T |
34127171 |
ctagcagcttcatcaagtctttgcctaatactcaaagggacctcatggtttgtaacttgaaagaagccccattccttgcatgcacttccaatcttcttca |
34127270 |
T |
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| Q |
125 |
ctaagctttcaatagcagatggatttggaacttcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttgg |
224 |
Q |
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| ||||| |||||||||||| ||| | ||||||||| |||||||||||| ||||| |||||||| ||||| |||| |||||| |||| ||| |||||||| |
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| T |
34127271 |
ccaagctatcaatagcagattgatcttgaacttcatggtggaatattggtgagaggtcaatttcgggaattccttcggcttcaatgatggatagttttgg |
34127370 |
T |
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