View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16814_low_24 (Length: 210)
Name: NF16814_low_24
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16814_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 31541668 - 31541849
Alignment:
| Q |
13 |
tgagatgaacactctgtctgattcatgtatgtgtggcagtgtgtattaggataaattaaggagggaaatgtgatcaaggtttgaggttaattaaagcata |
112 |
Q |
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| T |
31541668 |
tgaggtgaacactctgtctgattcatgtatgtgtggcagtgtgtattaggataaattaaggagggaaatgtgatcaaggtttgaggttaattaaatcata |
31541767 |
T |
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| Q |
113 |
atgtttcttagatttgnnnnnnnnnnnnnnnnnnnnncagacacatagctggtaggtttatgattagtgtatttattgttct |
194 |
Q |
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| T |
31541768 |
atgtttcttaaatttggaaagaaagaagaagaaaaaacagacacatagctggtaggtttatgattagtgtatttattgttct |
31541849 |
T |
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Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 31571609 - 31571693
Alignment:
| Q |
45 |
gtggcagtgtgtattag-gataaattaaggagggaaatgtgatcaaggtttgaggttaattaaagcataatgtttcttagatttg |
128 |
Q |
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| T |
31571609 |
gtggcagtgtgtattattgataaattaaggaggaaaatgtgatcaaggtttgaggttaattaaagcataatgttgcttaaatttg |
31571693 |
T |
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