View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16814_low_3 (Length: 534)
Name: NF16814_low_3
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16814_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 4 - 516
Target Start/End: Original strand, 6367101 - 6367616
Alignment:
| Q |
4 |
atctcgaagaatatcaaacaccgcaacaacatctatgtccacagtcaacaacaaacnnnnnnnnnnnnnnnnnnncttccttatactttattaggatgga |
103 |
Q |
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| T |
6367101 |
atctccaagaagatcaaacaccgcaacaacatctacgtccacagtcaacaacaaactttttttgattttttttttcttccttatactttattaggatgga |
6367200 |
T |
|
| Q |
104 |
aagaatgagttgcatgtttatacactcacaaatttgtaattta-tctagtgtttgtaatattttttaattagtttaggtatttaattaaagtagttatat |
202 |
Q |
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| T |
6367201 |
aagaatgagttgcatgtttatacactcacaaatttgtaatttaatctagtgtttgtaatattttttaattagtttaggtatttaattaaaatagttatat |
6367300 |
T |
|
| Q |
203 |
tacnnnnnnnnnacaattacannnnnnngttaacgtggccaatcaaaacttgatgaattctaccttaattactattatttgttgtttaaacttgattaat |
302 |
Q |
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| T |
6367301 |
tactttttttttacaattacatttttttgttaacgtggccaatcaaaacttgatgaattctaccttaattactattatttgttgtttaaacttgattaat |
6367400 |
T |
|
| Q |
303 |
tcaaatattatttggtgtttataacagttttcggttttatgcttccattaccata--caatcggcaagacaatgcattgataaccagttatgctctgaat |
400 |
Q |
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| T |
6367401 |
tcaaatattatttggtgtttataacagttttcggttttatgcttccattaccatatacaatcggcaagacaatgcattgataaccagttatgctctgaat |
6367500 |
T |
|
| Q |
401 |
ggatttgaatatgccatccaattatgctatctgaatgctaatagactttgcaatgcattgctacgatattacttttatggcttgattggagttaatgtct |
500 |
Q |
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| T |
6367501 |
ggatttgaatatgccatccaattatgctatctgaatgctaatagactttgcaatgcattgctacgatattacttttatggcttgattggagttaatgtct |
6367600 |
T |
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| Q |
501 |
aataactcgccttcat |
516 |
Q |
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| T |
6367601 |
aataactcgccttcat |
6367616 |
T |
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