View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16814_low_4 (Length: 473)
Name: NF16814_low_4
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16814_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Original strand, 37062725 - 37063171
Alignment:
| Q |
18 |
agaaagagctcaattttcacttacctcagttggaaaatcccacaaccacaaacacattattaaggaaccgaaaataagtgtgcctccaagcgctgttgag |
117 |
Q |
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| T |
37062725 |
agaaagagctcaattttcacttacctcagttggaaaatcccacaaccacaaacacattattaaggaaccgaaaataagtgtgcctccaagcgctgttgag |
37062824 |
T |
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| Q |
118 |
gaatagaggaccacaaatacaccagaaacccactgcaaatccaacacccaacccaaagtagagtgattgtgtaaaagaattctcatcattatcaatatca |
217 |
Q |
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| T |
37062825 |
gaatagaggaccacaaatacaccagaaacccactgcaaatccaacacccaacccaaagtagagtgattgtgtaaaagaattctcatcattatcaatatca |
37062924 |
T |
|
| Q |
218 |
ttgtgtcctcctccatgtaggtatgacccatgatcacatattggtagaggagctccacaaagtccaggattcccaacatagcaggaagcatcaaaacttt |
317 |
Q |
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| T |
37062925 |
ttgtgtcct---ccatgtaggtatgacccatgatcacatattggtagaggagctccacaaagtccaggattcccaacatagtaggaagcatcaaaacttt |
37063021 |
T |
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| Q |
318 |
gaagttgagtcccaactgggatttgcccaacaaggtaattgtttgacagattcaagaaactcaagaaggacaaagttgatgtggtaacaggaattcctcc |
417 |
Q |
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| T |
37063022 |
gaagttgagtcccaactgggatttgcccaacaaggtaattgtttgacagattcaagaaactcaagaaggacaaagttgatgtggtaacaggaattcctcc |
37063121 |
T |
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| Q |
418 |
aacaagtttattgtcggatagatcaagagattccaagtttttcatctctc |
467 |
Q |
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| T |
37063122 |
aacaagtttattgtcggatagatcaagagattccaagtttttcatgtctc |
37063171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 17943261 - 17943183
Alignment:
| Q |
263 |
agaggagctccacaaagtccaggattcccaacatagcaggaagcatcaaaactttgaagttgagtcccaactgggattt |
341 |
Q |
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| T |
17943261 |
agaggagctccacatagtttaggattcccaatgtaactcgatgcattaaaactttgaagttgagttccaattgggattt |
17943183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 13665641 - 13665705
Alignment:
| Q |
263 |
agaggagctccacaaagtccaggattcccaacatagcaggaagcatcaaaactttgaagttgagt |
327 |
Q |
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| T |
13665641 |
agaggagctccacaaagtttaggattcccaatataacttgatgcattaaaactttgaagttgagt |
13665705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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