View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16814_low_5 (Length: 454)

Name: NF16814_low_5
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16814_low_5
NF16814_low_5
[»] chr7 (17 HSPs)
chr7 (17-447)||(4630339-4630770)
chr7 (17-294)||(4666365-4666643)
chr7 (17-260)||(4661234-4661478)
chr7 (17-130)||(4643134-4643247)
chr7 (17-120)||(4672070-4672173)
chr7 (17-134)||(4652950-4653067)
chr7 (29-133)||(4636299-4636403)
chr7 (29-134)||(4863331-4863436)
chr7 (29-134)||(4697759-4697864)
chr7 (29-134)||(4784404-4784509)
chr7 (29-134)||(4816833-4816938)
chr7 (29-134)||(4846590-4846695)
chr7 (369-429)||(4784105-4784165)
chr7 (369-429)||(4816534-4816594)
chr7 (369-424)||(4712350-4712405)
chr7 (331-423)||(4666659-4666754)
chr7 (377-429)||(4636636-4636688)
[»] chr4 (1 HSPs)
chr4 (29-134)||(18926308-18926413)


Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 447
Target Start/End: Original strand, 4630339 - 4630770
Alignment:
Q  17 atccatcgacacaacctttgtacacgttcccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctttgatctccgcgattgt 116  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4630339 atccatcgacacaacctttgtacacgttcccaaaccctccaaatccgatgatgaaatcattgtcaaagttgtttgtggctgctttgatctccgcgattgt 4630438  T
Q  117 aaagtagcgacacaaatgcggctgcagagataataactctatgttctttgt-ttacacgaattatctgccatggcattgtgtaaccttctccttagccaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4630439 aaagtagcgacacaaatgcggctgcagagataataactctatgttctttgtcttacacgaattatctgccatggcattgtgtaaccttctccttagccaa 4630538  T
Q  216 aaaatagtgatacccacaacaattgttagcgtgaggcctgaaattgcaataacaacaacaaaagctgtggtgatcttaannnnnnnngacgactgggttg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  4630539 aaaatagtgatacccacaacaattgttagcgtgaggcctgaaattgcaataacaacaacaaaagctgtggtgatcttaattttttttgacgactgggttg 4630638  T
Q  316 aaaattcttgatgccggggagatagaccaatgaattttgaaatttgccctgcaagattagttttatcacttattttgaaaatctcaattccattcagcag 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4630639 aaaattcttgatgccggggagatagaccaatgaattttgaaatttgccctgcaagattagttttatcacttattttgaaaatctcaattccattcagcag 4630738  T
Q  416 gacatcacgatatattgtgtgtatagtctctg 447  Q
    ||||||||||||||||||||||||||| ||||    
T  4630739 gacatcacgatatattgtgtgtatagtttctg 4630770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 4666365 - 4666643
Alignment:
Q  17 atccatcgacacaacctttgtacacgttcccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctttgatctccgcgattgt 116  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  4666365 atccatcgacacaacctttgtacacgttgccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctctgatctctgcaattgt 4666464  T
Q  117 aaagtagcgacacaaatgcggctgcagagataataactctatgttctttgtttac-acgaattatctgccatggcattgtgtaaccttctccttagccaa 215  Q
    |||| | || |||||||| ||| ||| |||| | |||||| |||||||||||| | || | |||||||||||| ||||||| ||||||||||||||||||    
T  4666465 aaaggaccggcacaaatggggcggcaaagatgacaactctgtgttctttgttttcgacaagttatctgccatgacattgtgaaaccttctccttagccaa 4666564  T
Q  216 aaaatagtgatacccacaacaattgttagcgtgaggcctgaaattgcaataacaacaacaaaagctgtggtgatcttaa 294  Q
    ||||   |||||||||||| ||||| ||||  ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  4666565 aaaactatgatacccacaataattgctagcacgaggcctgaaactgcaattacaacaacaaaagctgtggtgatcttaa 4666643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 4661234 - 4661478
Alignment:
Q  17 atccatcgacacaacctttgtacacgttcccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctttgatctccgcgattgt 116  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||| || |||||    
T  4661234 atccatcaacacaacctttgtacacgttgccaaaccctccaactccaatgatgaaatcatcatcaaagttttttgtggctgctctgatctctgcaattgt 4661333  T
Q  117 aaagtagcgacacaaatgcggctgcagagataataactcta-tgttctttgt-ttacacgaattatctgccatggcattgtgtaaccttctccttagcca 214  Q
    ||||||||| |||||||| ||| ||| |||| ||||| ||| |||||||||| ||  || | |||||| || ||| | |||| ||| || ||||||||||    
T  4661334 aaagtagcggcacaaatggggcggcaaagatgataac-ctagtgttctttgtcttcgacaagttatctaccgtggtactgtgaaacattatccttagcca 4661432  T
Q  215 aaaaatagtgatacccacaacaattgttagcgtgaggcctgaaatt 260  Q
    ||  || ||||||||| | || |||  ||||  |||||||||||||    
T  4661433 aattattgtgatacccgcgacgattactagcacgaggcctgaaatt 4661478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 4643134 - 4643247
Alignment:
Q  17 atccatcgacacaacctttgtacacgttcccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctttgatctccgcgattgt 116  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| |||| || ||||||||||| |||||||||||||| ||||||||    
T  4643134 atccatcaacacaacctttgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtagctgctttgatctctgcgattgt 4643233  T
Q  117 aaagtagcgacaca 130  Q
    |||| |||| ||||    
T  4643234 aaaggagcggcaca 4643247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 4672070 - 4672173
Alignment:
Q  17 atccatcgacacaacctttgtacacgttcccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctttgatctccgcgattgt 116  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||  || |||| || |||||||||||||||||||||||||| ||||||||    
T  4672070 atccatcgacacaacctttgtacaggtttccaaaccctccaactccgatgatagaagcatcatcgaagttgtttgtggctgctttgatctctgcgattgt 4672169  T
Q  117 aaag 120  Q
    ||||    
T  4672170 aaag 4672173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 4652950 - 4653067
Alignment:
Q  17 atccatcgacacaacctttgtacacgttcccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctttgatctccgcgattgt 116  Q
    |||||||||  ||||||||||||||||| ||||| |||||||| |||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||    
T  4652950 atccatcgatgcaacctttgtacacgttgccaaatcctccaacaccgatgatgaaaacatcatcgaagttatttgtggctgctttgatctctgcgattgt 4653049  T
Q  117 aaagtagcgacacaaatg 134  Q
     ||| |||||||||||||    
T  4653050 gaaggagcgacacaaatg 4653067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 4636299 - 4636403
Alignment:
Q  29 aacctttgtacacgttcccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctttgatctccgcgattgtaaagtagcgaca 128  Q
    ||||||||||||| ||||||||||| ||||| ||||| |||   ||||| || ||||| |||||||||||| ||||||| ||||||||||||||||| ||    
T  4636299 aacctttgtacacattcccaaaccccccaacaccgataatgttttcatcatcgaagttttttgtggctgctctgatctctgcgattgtaaagtagcggca 4636398  T
Q  129 caaat 133  Q
    |||||    
T  4636399 caaat 4636403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 4863331 - 4863436
Alignment:
Q  29 aacctttgtacacgttcccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctttgatctccgcgattgtaaagtagcgaca 128  Q
    |||||||||||||||| || |||||||||||||| |||||||||  |||||||||||||||||| || ||| | ||||| |  |||||||| ||||| ||    
T  4863331 aacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggca 4863430  T
Q  129 caaatg 134  Q
    ||||||    
T  4863431 caaatg 4863436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 4697864 - 4697759
Alignment:
Q  29 aacctttgtacacgttcccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctttgatctccgcgattgtaaagtagcgaca 128  Q
    |||||||| ||||||| ||||||||||||||||| ||||| |||  ||| || ||||||||||| || ||| | |||||||| |||||||| ||||| ||    
T  4697864 aacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggca 4697765  T
Q  129 caaatg 134  Q
    ||||||    
T  4697764 caaatg 4697759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 4784509 - 4784404
Alignment:
Q  29 aacctttgtacacgttcccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctttgatctccgcgattgtaaagtagcgaca 128  Q
    ||||||||||||| || || ||||||||||| |||||||| |||  ||| || ||||||||||| |||||||| || ||||| |||||||| ||||| ||    
T  4784509 aacctttgtacacattgccgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggca 4784410  T
Q  129 caaatg 134  Q
    ||||||    
T  4784409 caaatg 4784404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 4816938 - 4816833
Alignment:
Q  29 aacctttgtacacgttcccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctttgatctccgcgattgtaaagtagcgaca 128  Q
    ||||||||||||| || || ||||||||||| |||||||| |||  ||| || ||||||||||| |||||||| || ||||| |||||||| ||||| ||    
T  4816938 aacctttgtacacattgccgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggca 4816839  T
Q  129 caaatg 134  Q
    ||||||    
T  4816838 caaatg 4816833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 4846695 - 4846590
Alignment:
Q  29 aacctttgtacacgttcccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctttgatctccgcgattgtaaagtagcgaca 128  Q
    |||||||||||||||| || ||||||||| |||| ||||| |||  ||| || ||||||||||| ||| || | |||||||| |||||||| ||||| ||    
T  4846695 aacctttgtacacgttgccgaaccctccagctccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggca 4846596  T
Q  129 caaatg 134  Q
    ||||||    
T  4846595 caaatg 4846590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 4784165 - 4784105
Alignment:
Q  369 agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatata 429  Q
    |||||| |||||||||||||||| ||||||||||||||||||| |  ||||||||||||||    
T  4784165 agattatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatata 4784105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 4816594 - 4816534
Alignment:
Q  369 agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatata 429  Q
    |||||| |||||||||||||||| ||||||||||||||||||| |  ||||||||||||||    
T  4816594 agattatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatata 4816534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 4712405 - 4712350
Alignment:
Q  369 agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacg 424  Q
    |||||| ||||||||||||||||||||||||||||||||||||  | |||||||||    
T  4712405 agattatttttatcacttattttgaaaatctcaattccattcattatgacatcacg 4712350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 331 - 423
Target Start/End: Original strand, 4666659 - 4666754
Alignment:
Q  331 ggggagatagaccaatgaattttgaaatttgccctgcaagatt---agttttatcacttattttgaaaatctcaattccattcagcaggacatcac 423  Q
    ||||||||||| ||||| ||||||| ||| | ||||| |||||   | |||| ||||||||||| |||||||| |||||||| || ||||||||||    
T  4666659 ggggagatagaacaatggattttgatattggtcctgcgagattgttatttttgtcacttatttttaaaatctcgattccattaagaaggacatcac 4666754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 4636636 - 4636688
Alignment:
Q  377 tttatcacttattttgaaaatctcaattccattcagcaggacatcacgatata 429  Q
    ||||||||| |||||||||||||| |||||||| || |  |||||||||||||    
T  4636636 tttatcactaattttgaaaatctcgattccattaagaataacatcacgatata 4636688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 18926413 - 18926308
Alignment:
Q  29 aacctttgtacacgttcccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctttgatctccgcgattgtaaagtagcgaca 128  Q
    ||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||| || |||||||||||||| ||    
T  18926413 aacctttatacacgttgccaaaccctccaactccgatgattaaatcatcatcaaagttatttgtggctgcttttatctctgcaattgtaaagtagcggca 18926314  T
Q  129 caaatg 134  Q
    ||||||    
T  18926313 caaatg 18926308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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