View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16814_low_6 (Length: 452)
Name: NF16814_low_6
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16814_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 12 - 434
Target Start/End: Complemental strand, 17989388 - 17988966
Alignment:
| Q |
12 |
tgagatgaaaacagaataataacaacagcaacaaacaatttgaaacaaaaaaggacaatattatgtatcactaaatatatcaagggtaaatcaacgaaga |
111 |
Q |
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| T |
17989388 |
tgagatgaaaacagaataataacaacagcaacaaacaatttgaaacaaaaaaggacaatattatgtatcacaaaatatatcaagggtaaatcaacgaaga |
17989289 |
T |
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| Q |
112 |
gtaatgaacagtaaaccattcgcacgatcaaaacagaagaaaacaactcaagtacgaacttactcaaactaatgagagatgaaagtgttgcaaagttcaa |
211 |
Q |
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| T |
17989288 |
gtaatgaacagtaaaccattcgcacgatcaaaacagaagaaaacaactcaagtacgaacttactcaaactaatgagagatgaaagtgttgcaaagttgaa |
17989189 |
T |
|
| Q |
212 |
gaaatgctgcctgattcgcaggattaacattttcactgatgacttgtaatttgttcagtccattcacctggcttatctcattaggtgccttttgtaggaa |
311 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
17989188 |
gaaatgctgcctgattcgcaggatcaacattttcactgatgacttgtaatttgttcagttcattcacctggcttatctcattaggcgccttttgtaggaa |
17989089 |
T |
|
| Q |
312 |
tacttgtagtagacgcaagagagcaggaacatttgcggaacttttccaaaagtgaggtgataaaacacattcaaatatctgcatgtatattggtgggata |
411 |
Q |
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| T |
17989088 |
tacttggagtagacgcaagagagcaggaatatttgcggaacttttccaaaagtgaggtgataaaacacattcaaatatctgcatgtatattggtgggata |
17988989 |
T |
|
| Q |
412 |
ggtggtctgtttaacccaactag |
434 |
Q |
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| T |
17988988 |
ggtggtctgtttaacccaactag |
17988966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 257
Target Start/End: Original strand, 9750534 - 9750728
Alignment:
| Q |
65 |
gacaatattatgtatcactaaatatatcaagggtaaatcaacgaagagtaatgaacagtaaaccattcg-cacgatcaaaacagaagaaaacaactcaag |
163 |
Q |
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|||||| ||||||||| ||||||||| ||||||| || || ||| ||| ||| |||| |||||| | | ||| |||||||||||||||| || ||||| |
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| T |
9750534 |
gacaatgttatgtatctttaaatatattaagggtagattaaggaaaagtcatggacagaaaaccaataggcacattcaaaacagaagaaaataagtcaag |
9750633 |
T |
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| Q |
164 |
tacgaacttactcaaactaatg-agagatgaaagtgttgcaaagttcaagaaatgctgcctgattcgcaggattaacattttcactgatgacttg |
257 |
Q |
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| T |
9750634 |
taccaacttactcaaactaatgctcggttgtaagtggtgcaaagttgaagcaatgctgtctgattcacaggatcaacatttgcagtgatgacttg |
9750728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 280 - 431
Target Start/End: Original strand, 9751390 - 9751541
Alignment:
| Q |
280 |
tggcttatctcattaggtgccttttgtaggaatacttgtagtagacgcaagagagcaggaacatttgcggaacttttccaaaagtgaggtgataaaacac |
379 |
Q |
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||||| || ||||| ||||||||||| ||||| | || |||||||||| || |||||||| ||||| ||||||||| | | |||||| |||| | |
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| T |
9751390 |
tggctgatttcatttggtgccttttgaaggaaggcctggagtagacgcacaagggcaggaacgcttgcgcttcttttccaagaatcaggtgacaaaagaa |
9751489 |
T |
|
| Q |
380 |
attcaaatatctgcatgtatattggtgggataggtggtctgtttaacccaac |
431 |
Q |
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| T |
9751490 |
tctcaaatatctgcatgtagattggtgggatgggtggtctgtttaactcaac |
9751541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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