View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16814_low_7 (Length: 436)

Name: NF16814_low_7
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16814_low_7
NF16814_low_7
[»] chr5 (19 HSPs)
chr5 (13-417)||(23769504-23769908)
chr5 (13-417)||(23819352-23819756)
chr5 (13-417)||(23860887-23861288)
chr5 (13-417)||(23813954-23814355)
chr5 (13-305)||(23764230-23764522)
chr5 (45-417)||(23673555-23673924)
chr5 (109-414)||(23732051-23732353)
chr5 (259-414)||(23729329-23729481)
chr5 (301-414)||(23644504-23644617)
chr5 (172-282)||(23766855-23766965)
chr5 (172-282)||(23816703-23816813)
chr5 (13-141)||(23774208-23774335)
chr5 (13-141)||(23754168-23754300)
chr5 (217-292)||(11081806-11081881)
chr5 (224-273)||(20292995-20293044)
chr5 (224-273)||(20301443-20301492)
chr5 (224-273)||(20305856-20305905)
chr5 (224-273)||(20310260-20310309)
chr5 (222-274)||(3181715-3181767)
[»] chr3 (40 HSPs)
chr3 (222-292)||(4142117-4142187)
chr3 (222-282)||(4157937-4157997)
chr3 (222-280)||(2696727-2696785)
chr3 (223-292)||(3754599-3754668)
chr3 (222-279)||(7432050-7432107)
chr3 (224-280)||(2442039-2442095)
chr3 (181-287)||(2686300-2686409)
chr3 (168-278)||(956325-956435)
chr3 (198-275)||(1891064-1891141)
chr3 (224-273)||(13498224-13498273)
chr3 (174-282)||(1007411-1007519)
chr3 (174-282)||(1022439-1022547)
chr3 (224-275)||(2456249-2456300)
chr3 (222-280)||(803213-803271)
chr3 (226-276)||(2459277-2459327)
chr3 (225-275)||(2631358-2631408)
chr3 (224-282)||(2644355-2644413)
chr3 (224-282)||(2659145-2659203)
chr3 (198-287)||(2678387-2678476)
chr3 (222-282)||(968669-968729)
chr3 (222-282)||(1931147-1931207)
chr3 (198-282)||(1936973-1937057)
chr3 (222-282)||(1940572-1940632)
chr3 (224-275)||(771499-771550)
chr3 (224-275)||(7324431-7324482)
chr3 (224-275)||(7942485-7942536)
chr3 (224-275)||(37753345-37753396)
chr3 (224-275)||(43991960-43992011)
chr3 (29-71)||(1013777-1013819)
chr3 (104-138)||(1891195-1891229)
chr3 (224-282)||(7334232-7334290)
chr3 (223-273)||(9608346-9608396)
chr3 (226-276)||(23197014-23197064)
chr3 (224-289)||(792890-792955)
chr3 (25-70)||(989203-989248)
chr3 (222-287)||(3746006-3746071)
chr3 (227-292)||(9587168-9587233)
chr3 (222-282)||(989394-989454)
chr3 (224-280)||(2476634-2476690)
chr3 (86-122)||(12132950-12132986)
[»] chr6 (3 HSPs)
chr6 (225-275)||(24417486-24417536)
chr6 (223-276)||(4183000-4183053)
chr6 (223-276)||(4743844-4743897)
[»] chr4 (4 HSPs)
chr4 (227-297)||(22672105-22672175)
chr4 (219-280)||(20019767-20019828)
chr4 (219-280)||(20016180-20016242)
chr4 (34-66)||(22672321-22672353)
[»] chr2 (5 HSPs)
chr2 (224-276)||(36577366-36577418)
chr2 (227-277)||(7168688-7168738)
chr2 (224-277)||(7160752-7160805)
chr2 (234-278)||(6538844-6538888)
chr2 (223-275)||(33038159-33038211)
[»] chr1 (7 HSPs)
chr1 (223-292)||(51381438-51381507)
chr1 (223-276)||(51858605-51858658)
chr1 (223-274)||(25478864-25478915)
chr1 (222-273)||(51782797-51782848)
chr1 (230-276)||(51407558-51407604)
chr1 (223-276)||(51756749-51756802)
chr1 (223-276)||(51854946-51854999)
[»] scaffold0044 (1 HSPs)
scaffold0044 (223-275)||(89142-89194)
[»] scaffold0015 (1 HSPs)
scaffold0015 (223-274)||(32330-32381)
[»] chr7 (1 HSPs)
chr7 (89-137)||(1078313-1078361)


Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 417
Target Start/End: Complemental strand, 23769908 - 23769504
Alignment:
Q  13 ggagcagagatcgggaaaatatgtgaatggcacgattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttcttttgatttggga 112  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23769908 ggagcagaaatcgggaaaatatgtgaatggcacgattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttcttttgatttggga 23769809  T
Q  113 aacgagtcttataaaaaagttttgctacctgactatgactatagggaaattggttcacgtactttgcacttgagtgttttcgggaattgtttgtgctgga 212  Q
    ||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23769808 aacgagtcttataaaaaagttttgctaccggattatgattatagagaaattggttcacgtactttgcacttgagtgttttcgggaattgtttgtgctgga 23769709  T
Q  213 tttgtagtaatgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactatacctttcatgccatcttattattatctctt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23769708 tttgtagtaatgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctttcatgccatcttattatcatctctt 23769609  T
Q  313 tgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacgcaggatttgacccggaacttggttttttacaattctataaatggctct 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23769608 tgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacgcaggatttgacccggaacttggttttttacaattctataaatggctct 23769509  T
Q  413 gtaaa 417  Q
    |||||    
T  23769508 gtaaa 23769504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 417
Target Start/End: Complemental strand, 23819756 - 23819352
Alignment:
Q  13 ggagcagagatcgggaaaatatgtgaatggcacgattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttcttttgatttggga 112  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23819756 ggagcagaaatcgggaaaatatgtgaatggcacgattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttcttttgatttggga 23819657  T
Q  113 aacgagtcttataaaaaagttttgctacctgactatgactatagggaaattggttcacgtactttgcacttgagtgttttcgggaattgtttgtgctgga 212  Q
    ||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23819656 aacgagtcttataaaaaagttttgctaccggattatgattatagagaaattggttcacgtactttgcacttgagtgttttcgggaattgtttgtgctgga 23819557  T
Q  213 tttgtagtaatgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactatacctttcatgccatcttattattatctctt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23819556 tttgtagtaatgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctttcatgccatcttattatcatctctt 23819457  T
Q  313 tgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacgcaggatttgacccggaacttggttttttacaattctataaatggctct 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23819456 tgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacgcaggatttgacccggaacttggttttttacaattctataaatggctct 23819357  T
Q  413 gtaaa 417  Q
    |||||    
T  23819356 gtaaa 23819352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 417
Target Start/End: Complemental strand, 23861288 - 23860887
Alignment:
Q  13 ggagcagagatcgggaaaatatgtgaatggcacgattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttcttttgatttggga 112  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23861288 ggagcagaaatcgggaaaatatgtgaatggcgcgattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttcttttgatttggga 23861189  T
Q  113 aacgagtcttataaaaaagttttgctacctgactatgactatagggaaattggttcacgtactttgcacttgagtgttttcgggaattgtttgtgctgga 212  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| | ||| | |||||||||||||||||||||||||||| ||||||||||||||||||    
T  23861188 aacgagtcttataaaaaagttttgctacctgattatgattatagagcaatagattcacgtactttgcacttgagtgttttcaggaattgtttgtgctgga 23861089  T
Q  213 tttgtagtaatgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactatacctttcatgccatcttattattatctctt 312  Q
    ||| |||||||||||||||||| ||||||||||||||||  ||||| ||||||||||||||||||||||| ||||||||||||||||||||||   ||||    
T  23861088 tttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatgccatcttattatt---tctt 23860992  T
Q  313 tgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacgcaggatttgacccggaacttggttttttacaattctataaatggctct 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  23860991 tgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacacaggattcgacccggaacttggttttttacaattctacaaatggctct 23860892  T
Q  413 gtaaa 417  Q
    |||||    
T  23860891 gtaaa 23860887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 417
Target Start/End: Complemental strand, 23814355 - 23813954
Alignment:
Q  13 ggagcagagatcgggaaaatatgtgaatggcacgattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttcttttgatttggga 112  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23814355 ggagcagaaatcaggaaaatatgtgaatggcacgattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttcttttgatttggga 23814256  T
Q  113 aacgagtcttataaaaaagttttgctacctgactatgactatagggaaattggttcacgtactttgcacttgagtgttttcgggaattgtttgtgctgga 212  Q
    |||||||||||||||||||||||||||||||| | ||| ||||| | ||| | ||||| |||||||||||||||||||||||||||||||||||||||||    
T  23814255 aacgagtcttataaaaaagttttgctacctgattgtgattatagagcaatagattcacttactttgcacttgagtgttttcgggaattgtttgtgctgga 23814156  T
Q  213 tttgtagtaatgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactatacctttcatgccatcttattattatctctt 312  Q
    ||| |||||||||||||||||| ||||||||||||||||  | ||| ||||||||||||||||||||||| ||||||||||||||||||||||   ||||    
T  23814155 tttctagtaatgatgtttggataatgaaggaatatgggatgacagcgtcttggactaaattgttcactattcctttcatgccatcttattatt---tctt 23814059  T
Q  313 tgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacgcaggatttgacccggaacttggttttttacaattctataaatggctct 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||||||||||||||||||||||||||||    
T  23814058 tgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacgcaggattcgatccaaaacttggttttttacaattctataaatggctct 23813959  T
Q  413 gtaaa 417  Q
    |||||    
T  23813958 gtaaa 23813954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 23764522 - 23764230
Alignment:
Q  13 ggagcagagatcgggaaaatatgtgaatggcacgattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttcttttgatttggga 112  Q
    |||||||| |||||||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  23764522 ggagcagaaatcgggaaaatatgtgaatggcgcttttaattggttggcttctaaagattatggtaaaggtcaatgttttattgcttcttttgatttggga 23764423  T
Q  113 aacgagtcttataaaaaagttttgctacctgactatgactatagggaaattggttcacgtactttgcacttgagtgttttcgggaattgtttgtgctgga 212  Q
    ||||||||||||||||||||||||||||| || ||||| ||||| ||| ||| |||||||||||||||||||| ||||||| ||||||||||||||||||    
T  23764422 aacgagtcttataaaaaagttttgctaccggattatgattatagagaatttgattcacgtactttgcacttgattgttttccggaattgtttgtgctgga 23764323  T
Q  213 tttgtagtaatgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactatacctttcatgccatcttattatt 305  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||| |||||||||| |||||||||||| ||||||||||||||||||||||    
T  23764322 tttgtagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactacattgttcactattcctttcatgccatcttattatt 23764230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 45 - 417
Target Start/End: Original strand, 23673555 - 23673924
Alignment:
Q  45 cgattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttcttttgatttgggaaacgagtcttataaaaaagttttgctacctga 144  Q
    |||| ||||||||||||||||| ||| |||||||| |||||| ||||||| |||||||||||||||||| |||||||||||||||||||||| |||| ||    
T  23673555 cgatcaattggttggcttctaatgatcatagtaaaagtcaacattttatttcttcttttgatttgggaagcgagtcttataaaaaagttttgttaccaga 23673654  T
Q  145 ctatgactatagggaaattggttcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttgtagtaatgatgtttggattatgaaggaa 244  Q
     ||||| |||||   ||  |  ||||| ||||||| | |||||||| || | || ||||| || ||||| | |||||||||||||||||| |||||||||    
T  23673655 ttatgattatagaacaacagaatcacgaactttgctcctgagtgttgtcagcaagtgtttttggtggatgtctagtaatgatgtttggataatgaaggaa 23673754  T
Q  245 tatgggaataaagcatcttggactaaattgttcactatacctttcatgccatcttattattatctctttgccaatgtaatgcatatttttgaggatggcc 344  Q
     ||  ||| ||| |||| ||| ||||||||||| | || |||||| | ||||| |||||||   ||||||||||||||||||||||||||||||||||||    
T  23673755 gattagaagaaaacatcgtggtctaaattgttcgccattcctttcctcccatcctattatt---tctttgccaatgtaatgcatatttttgaggatggcc 23673851  T
Q  345 tagtgacgtggaagtctacgcaggatttgacccggaacttggttttttacaattctataaatggctctgtaaa 417  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  23673852 tagtgacgtggaagtctacacaggattcgacccggaacttggttttttacaattctacaaatggctctgtaaa 23673924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 109 - 414
Target Start/End: Original strand, 23732051 - 23732353
Alignment:
Q  109 gggaaacgagtcttataaaaaagttttgctacct-gactatgactatagggaaattggttcacgtactttgcacttgagtgttttcgggaattgtttgtg 207  Q
    |||||||||||||||||||||||||||||| ||| || ||||| || ||   ||| | |||| || |||| ||||||||||||||| |||||||||||||    
T  23732051 gggaaacgagtcttataaaaaagttttgcttccttgattatgattaaagaacaatagattcatgttctttccacttgagtgttttcaggaattgtttgtg 23732150  T
Q  208 ctggatttgtagtaatgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactataccttt-catgccatcttattatta 306  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||| ||||| |||||||      |||||    
T  23732151 gtggatttctagtaatgatgtttggattatgaaggaatatgggaataaagcgtcttggaataaactgttcactattcctttccatgcca------tatta 23732244  T
Q  307 tctctttgccaatgtaatgcat-atttttgaggatggcctagtgacgtggaagtctacgcaggatttgacccggaacttggttttttacaattctataaa 405  Q
    | |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||    
T  23732245 tttctttgccaatgtaatgcataaattttgaggatggcctagtgacgtggaagtctacacaggattcgacccggaacttggttttttacaattctacaaa 23732344  T
Q  406 tggctctgt 414  Q
    |||||||||    
T  23732345 tggctctgt 23732353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 259 - 414
Target Start/End: Original strand, 23729329 - 23729481
Alignment:
Q  259 atcttggactaaattgttcactatacctttcatgccatcttattattatctctttgccaatgtaatgcatatttttgaggatggcctagtgacgtggaag 358  Q
    |||||||||||||||| ||||||  |||||||  |||||||||   ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  23729329 atcttggactaaattgctcactactcctttcaacccatcttat---tatctctttgccattgtaatgcataattttgaggatggcctagtgacgtggaag 23729425  T
Q  359 tctacgcaggatttgacccggaacttggttttttacaattctataaatggctctgt 414  Q
    ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  23729426 tctacacaggattcgacccggaacttggttttttacaattctacaaatggctctgt 23729481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 301 - 414
Target Start/End: Original strand, 23644504 - 23644617
Alignment:
Q  301 ttattatctctttgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacgcaggatttgacccggaacttggttttttacaattct 400  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||    
T  23644504 ttattatttctttgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacacaggattcgatccggaacttggttttttacaattct 23644603  T
Q  401 ataaatggctctgt 414  Q
    | ||||||||||||    
T  23644604 acaaatggctctgt 23644617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 172 - 282
Target Start/End: Complemental strand, 23766965 - 23766855
Alignment:
Q  172 tactttgcacttgagtgttttcgggaattgtttgtgctggatttgtagtaatgatgtttggattatgaaggaatatgggaataaagcatcttggactaaa 271  Q
    |||||||||||||||| ||| | ||||||||||||||    ||| | |||||||||||||||||||||| |||||||| |||||||  ||||||||||||    
T  23766965 tactttgcacttgagtttttgcaggaattgtttgtgcctcgtttctggtaatgatgtttggattatgaaagaatatggaaataaagagtcttggactaaa 23766866  T
Q  272 ttgttcactat 282  Q
    |||||||||||    
T  23766865 ttgttcactat 23766855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 172 - 282
Target Start/End: Complemental strand, 23816813 - 23816703
Alignment:
Q  172 tactttgcacttgagtgttttcgggaattgtttgtgctggatttgtagtaatgatgtttggattatgaaggaatatgggaataaagcatcttggactaaa 271  Q
    |||||||||||||||| ||| | ||||||||||||||    ||| | |||||||||||||||||||||| |||||||| |||||||  ||||||||||||    
T  23816813 tactttgcacttgagtttttgcaggaattgtttgtgcctcgtttctggtaatgatgtttggattatgaaagaatatggaaataaagagtcttggactaaa 23816714  T
Q  272 ttgttcactat 282  Q
    |||||||||||    
T  23816713 ttgttcactat 23816703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 23774335 - 23774208
Alignment:
Q  13 ggagcagagatcgggaaaatatgtgaatggcacgattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttcttttgatttggg- 111  Q
    |||||||| |||||||||||||||||||||| ||| || | ||||||||| |||||||||| ||||| |||||||||||| || ||||||||||| |||     
T  23774335 ggagcagaaatcgggaaaatatgtgaatggcgcgaatattgggttggcttttaaagattat-gtaaaagtcaacgtttta-tggttcttttgattgggga 23774238  T
Q  112 aaacgagtcttataaaaaagttttgctacc 141  Q
    |||| ||||||| |||||||||||| ||||    
T  23774237 aaacaagtcttaaaaaaaagttttggtacc 23774208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 23754300 - 23754168
Alignment:
Q  13 ggagcagagatcgggaaaatatgtgaatggcacgattaattggtt-ggcttctaaagattatagtaaaggtcaacgtttta-ttgcttcttttgatttgg 110  Q
    |||||| | |||||||||| |||||||||||||||| |||||||| |||||| ||||| || || ||||| |||||||||| ||| ||||||||||| ||    
T  23754300 ggagcaaaaatcgggaaaaaatgtgaatggcacgataaattggttgggcttccaaagaataaagaaaagggcaacgttttatttgtttcttttgattggg 23754201  T
Q  111 gaaacgag-tctt-ataaaaaagttttgctacc 141  Q
    |||||||| |||| | |||||||||||||||||    
T  23754200 gaaacgagttcttaaaaaaaaagttttgctacc 23754168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 11081806 - 11081881
Alignment:
Q  217 tagtaatgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactatacctttcatg 292  Q
    |||| ||||||||||| |||||||||| ||||| |||||||  ||||||||||||||||| ||||| |||| ||||    
T  11081806 tagtgatgatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtttactattccttacatg 11081881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 20292995 - 20293044
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaatt 273  Q
    |||||||||||||||||||||||||| | |||||  ||||||||||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 20301443 - 20301492
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaatt 273  Q
    |||||||||||||||||||||||||  | |||||  ||||||||||||||    
T  20301443 gatgtttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 20305856 - 20305905
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaatt 273  Q
    ||||| |||||||||||||||||||| | |||||  ||||||||||||||    
T  20305856 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 20310260 - 20310309
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaatt 273  Q
    ||||| |||||||||||||||||||| | |||||  ||||||||||||||    
T  20310260 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 3181715 - 3181767
Alignment:
Q  222 atgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattg 274  Q
    ||||||||||| |||||||||||||||| ||| |||  ||||||| |||||||    
T  3181715 atgatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattg 3181767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 4142187 - 4142117
Alignment:
Q  222 atgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactatacctttcatg 292  Q
    ||||||||||| |||||||||||||||| |||||||  ||||||||||||||||||||||| |||| ||||    
T  4142187 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 4142117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 4157997 - 4157937
Alignment:
Q  222 atgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactat 282  Q
    ||||||||||| |||||||||||||||| |||||||  |||||||||||||||||||||||    
T  4157997 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactat 4157937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 2696785 - 2696727
Alignment:
Q  222 atgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcact 280  Q
    |||||||||||||||||||||||||||| |||||||  ||||||| |||||||||||||    
T  2696785 atgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcact 2696727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 3754599 - 3754668
Alignment:
Q  223 tgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactatacctttcatg 292  Q
    |||||||||| |||||||||||||||| |||||||  ||||||||||||||||| ||||| |||| ||||    
T  3754599 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtttactattccttgcatg 3754668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 7432107 - 7432050
Alignment:
Q  222 atgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcac 279  Q
    |||||||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||    
T  7432107 atgatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgttcac 7432050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 2442039 - 2442095
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcact 280  Q
    |||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||    
T  2442039 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 2442095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 2686409 - 2686300
Alignment:
Q  181 cttgagtgttttcgggaattgtttgtgctggatttgtagtaatgatgtttgg---attatgaaggaatatgggaataaagcatcttggactaaattgttc 277  Q
    |||| |||||||  || |||||||||||| ||| ||| || |||||||||||   ||||||||||||||||| || ||||  ||||||| ||||||||||    
T  2686409 cttgggtgttttgagggattgtttgtgcttgatctgtggtgatgatgtttgggttattatgaaggaatatggaaaaaaagagtcttggaataaattgttc 2686310  T
Q  278 actatacctt 287  Q
    ||||| ||||    
T  2686309 actattcctt 2686300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 278
Target Start/End: Original strand, 956325 - 956435
Alignment:
Q  168 cacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttgtagtaatgatgtttggattatgaaggaatatgggaataaagcatcttggac 267  Q
    ||||| ||||| |||||||||||||| || |||| ||||||  ||||| | ||   |||||||||||||||||||||||||| || ||||  ||||||      
T  956325 cacgttctttgaacttgagtgttttcagggattgcttgtgcatgatttttggttgcgatgtttggattatgaaggaatatggaaaaaaagagtcttggca 956424  T
Q  268 taaattgttca 278  Q
    |||||||||||    
T  956425 taaattgttca 956435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 1891141 - 1891064
Alignment:
Q  198 attgtttgtgctggatttgtagtaatgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgt 275  Q
    |||||||||||  | ||| | || ||||||||||||||||||||||| |||| |||||||  ||||||||||||||||    
T  1891141 attgtttgtgcctggtttttggtcatgatgtttggattatgaaggaacatggaaataaagactcttggactaaattgt 1891064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaatt 273  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 282
Target Start/End: Original strand, 1007411 - 1007519
Alignment:
Q  174 ctttgcacttgagtgttttcgggaattgtttgtgctggatttgtagtaatgatgtttggattatgaaggaatatgggaataaagcatcttggactaaatt 273  Q
    |||||||||||||||||||  || |||| |||  |  | ||||| || ||||||||||| | |||||||||||||| ||||| |  || |||||||||||    
T  1007411 ctttgcacttgagtgtttttagggattgcttgaccgtgttttgtggtgatgatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaatt 1007510  T
Q  274 gttcactat 282  Q
    |||||||||    
T  1007511 gttcactat 1007519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 282
Target Start/End: Original strand, 1022439 - 1022547
Alignment:
Q  174 ctttgcacttgagtgttttcgggaattgtttgtgctggatttgtagtaatgatgtttggattatgaaggaatatgggaataaagcatcttggactaaatt 273  Q
    |||||||||||||||||||  || |||| |||  |  | ||||| || ||||||||||| | |||||||||||||| ||||| |  || |||||||||||    
T  1022439 ctttgcacttgagtgtttttagggattgcttgaccgtgttttgtggtgatgatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaatt 1022538  T
Q  274 gttcactat 282  Q
    |||||||||    
T  1022539 gttcactat 1022547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 2456249 - 2456300
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgt 275  Q
    ||||||||| |||||||||||||||| |||||||  ||||||||||||||||    
T  2456249 gatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgt 2456300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 803271 - 803213
Alignment:
Q  222 atgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcact 280  Q
    ||||||||||| ||||||| |||||||| |||||||  ||||||||||| |||||||||    
T  803271 atgatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttcact 803213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 2459277 - 2459327
Alignment:
Q  226 tgtttggattatgaaggaatatgggaataaagcatcttggactaaattgtt 276  Q
    |||||||||||||||||||||||| |||||||  |||||||| ||||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgtt 2459327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 2631358 - 2631408
Alignment:
Q  225 atgtttggattatgaaggaatatgggaataaagcatcttggactaaattgt 275  Q
    ||||||||||||||||||||||||| ||| |||  ||||||||||||||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgt 2631408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 2644413 - 2644355
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactat 282  Q
    |||||||||||||||||||| ||||| ||| |||  |||||||||||||||| ||||||    
T  2644413 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactat 2644355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 2659203 - 2659145
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactat 282  Q
    |||||||||||||||||||| ||||| ||| |||  |||||||||||||||| ||||||    
T  2659203 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactat 2659145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 2678476 - 2678387
Alignment:
Q  198 attgtttgtgctggatttgtagtaatgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactatacctt 287  Q
    |||| ||||||| || |||| || ||||||||||| |||||||  ||||||| || ||||  || |||||||||||||||||||| ||||    
T  2678476 attgcttgtgcttgacttgtggtgatgatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgttcactattcctt 2678387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 968669 - 968729
Alignment:
Q  222 atgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactat 282  Q
    ||||||||||| ||||||||||| |||| |||||||  || ||||||||||| ||||||||    
T  968669 atgatgtttgggttatgaaggaacatggaaataaagagtcatggactaaattattcactat 968729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 1931207 - 1931147
Alignment:
Q  222 atgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactat 282  Q
    ||||||||||| |||||| |||| |||| |||||||  || ||||||||||||||||||||    
T  1931207 atgatgtttgggttatgatggaacatggaaataaagactcctggactaaattgttcactat 1931147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 1937057 - 1936973
Alignment:
Q  198 attgtttgtgctggatttgtagtaatgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactat 282  Q
    |||||||||||  | ||| | || ||||||||||| ||||||||||||||   ||||||| ||| ||| ||||||||||||||||    
T  1937057 attgtttgtgcatggtttttggttatgatgtttgggttatgaaggaatataaaaataaagaatcctggtctaaattgttcactat 1936973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 1940632 - 1940572
Alignment:
Q  222 atgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactat 282  Q
    ||||||||||| ||||||||||| |||| ||| |||  || ||||||||||||||||||||    
T  1940632 atgatgtttgggttatgaaggaacatggaaatcaagactcgtggactaaattgttcactat 1940572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 771550 - 771499
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgt 275  Q
    ||||||||| |||||||||||||||| |||| ||  ||||||||||||||||    
T  771550 gatgtttgggttatgaaggaatatggaaatacagactcttggactaaattgt 771499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 7324482 - 7324431
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgt 275  Q
    |||||||||||||||||||| || || |||||||  ||||||||||||||||    
T  7324482 gatgtttggattatgaaggactacggaaataaagagtcttggactaaattgt 7324431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 7942485 - 7942536
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgt 275  Q
    |||||||||||||||||||| ||||| |||||||  ||||||| ||||||||    
T  7942485 gatgtttggattatgaaggagtatggtaataaagagtcttggattaaattgt 7942536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 37753396 - 37753345
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgt 275  Q
    ||||||||||||||| |||||||||| || ||||  ||||||||||||||||    
T  37753396 gatgtttggattatggaggaatatggaaagaaagagtcttggactaaattgt 37753345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 43991960 - 43992011
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgt 275  Q
    |||||||||||||||||||||||||| |||| ||  |||||||| |||||||    
T  43991960 gatgtttggattatgaaggaatatggaaatatagagtcttggaccaaattgt 43992011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 1013777 - 1013819
Alignment:
Q  29 aaatatgtgaatggcacgattaattggttggcttctaaagatt 71  Q
    |||| ||||| |||||||||||||||||||||||| |||||||    
T  1013777 aaatgtgtgagtggcacgattaattggttggcttcaaaagatt 1013819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 1891229 - 1891195
Alignment:
Q  104 gatttgggaaacgagtcttataaaaaagttttgct 138  Q
    |||||||||||||||||||||||| ||||||||||    
T  1891229 gatttgggaaacgagtcttataaagaagttttgct 1891195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 7334290 - 7334232
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactat 282  Q
    ||||||||||| |||||||| || || |||||||  |||||||||||||||| ||||||    
T  7334290 gatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgtacactat 7334232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 9608396 - 9608346
Alignment:
Q  223 tgatgtttggattatgaaggaatatgggaataaagcatcttggactaaatt 273  Q
    |||||||||| |||||||||||||||| |||| ||  ||||||||||||||    
T  9608396 tgatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 23197014 - 23197064
Alignment:
Q  226 tgtttggattatgaaggaatatgggaataaagcatcttggactaaattgtt 276  Q
    ||||||| | |||||||||||||| ||| ||| ||||||||||||||||||    
T  23197014 tgtttggctgatgaaggaatatggaaatgaagaatcttggactaaattgtt 23197064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 792955 - 792890
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactatacctttc 289  Q
    |||||||||||||||||||| ||||| ||  | | |||||||| |||||| |||||||| ||||||    
T  792955 gatgtttggattatgaaggagtatggtaaagaggaatcttggagtaaattattcactattcctttc 792890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 989203 - 989248
Alignment:
Q  25 gggaaaatatgtgaatggcacgattaattggttggcttctaaagat 70  Q
    |||| ||| ||||| |||||| ||||||||||||||||||||||||    
T  989203 gggacaatttgtgagtggcaccattaattggttggcttctaaagat 989248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 3746006 - 3746071
Alignment:
Q  222 atgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactatacctt 287  Q
    ||||| |||||||||||||||||||||  ||  |||  ||||||||||||||||| ||||| ||||    
T  3746006 atgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctt 3746071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 9587233 - 9587168
Alignment:
Q  227 gtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactatacctttcatg 292  Q
    ||||||||||||||||||||||| |||||||   ||||||| ||||||| || ||| |||| ||||    
T  9587233 gtttggattatgaaggaatatggaaataaagagccttggacaaaattgtacaatattccttacatg 9587168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 989394 - 989454
Alignment:
Q  222 atgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactat 282  Q
    ||||||||||| | ||||| || || || |||||||  |||||||||||||||||||||||    
T  989394 atgatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcactat 989454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 2476634 - 2476690
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcact 280  Q
    |||||||||||||||||  | ||||| |||||||  |||||||||||||||| ||||    
T  2476634 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacact 2476690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 12132950 - 12132986
Alignment:
Q  86 cgttttattgcttcttttgatttgggaaacgagtctt 122  Q
    |||||||||| |||||||||||||||||| |||||||    
T  12132950 cgttttattgtttcttttgatttgggaaaagagtctt 12132986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 24417536 - 24417486
Alignment:
Q  225 atgtttggattatgaaggaatatgggaataaagcatcttggactaaattgt 275  Q
    |||||||||||||||| |||||||| ||||||| |||||||||||||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattgt 24417486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 4183053 - 4183000
Alignment:
Q  223 tgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgtt 276  Q
    |||||||||||| |||||||||||||| |||  |  ||||||||||||||||||    
T  4183053 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 4183000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 4743897 - 4743844
Alignment:
Q  223 tgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgtt 276  Q
    |||||||||||| |||||||||||||| |||  |  ||||||||||||||||||    
T  4743897 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 4743844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 22672175 - 22672105
Alignment:
Q  227 gtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactatacctttcatgccatc 297  Q
    |||||| | |||||||||||||| ||||| | ||||||||||||||||||||||||  ||| |||||||||    
T  22672175 gtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttcactatttcttacatgccatc 22672105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 20019828 - 20019767
Alignment:
Q  219 gtaatgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcact 280  Q
    |||||||||||||| | |||||||||||||| | | |||  |||||||||||||||||||||    
T  20019828 gtaatgatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcact 20019767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 20016242 - 20016180
Alignment:
Q  219 gtaatgatgttt-ggattatgaaggaatatgggaataaagcatcttggactaaattgttcact 280  Q
    |||||||||||| |||| |||||||||||||| | | |||  |||||||||||||||||||||    
T  20016242 gtaatgatgttttggatcatgaaggaatatggaattcaagagtcttggactaaattgttcact 20016180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 22672353 - 22672321
Alignment:
Q  34 tgtgaatggcacgattaattggttggcttctaa 66  Q
    ||||| |||||||||||||||||||||||||||    
T  22672353 tgtgagtggcacgattaattggttggcttctaa 22672321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 36577366 - 36577418
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgtt 276  Q
    |||||||||||||||||||||||||| |||||||  ||||||| |||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 7168738 - 7168688
Alignment:
Q  227 gtttggattatgaaggaatatgggaataaagcatcttggactaaattgttc 277  Q
    |||||| |||||||||||||||| ||||| |  ||||||||||||||||||    
T  7168738 gtttggcttatgaaggaatatggaaataacgattcttggactaaattgttc 7168688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 7160805 - 7160752
Alignment:
Q  224 gatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttc 277  Q
    ||||||||| |||||||||| ||||| ||||| |  ||||||||||||||||||    
T  7160805 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 7160752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 6538844 - 6538888
Alignment:
Q  234 ttatgaaggaatatgggaataaagcatcttggactaaattgttca 278  Q
    |||||||||| ||||| |||||||  |||||||||||||||||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttca 6538888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 33038159 - 33038211
Alignment:
Q  223 tgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgt 275  Q
    ||||||||||||||||||||||||||| || |||   |||||||||| |||||    
T  33038159 tgatgtttggattatgaaggaatatggaaacaaaaagtcttggactagattgt 33038211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 51381507 - 51381438
Alignment:
Q  223 tgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgttcactatacctttcatg 292  Q
    |||| ||||||||||||| |||||||| ||| |||  ||||||||||||||||||| ||| |||| ||||    
T  51381507 tgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatg 51381438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 51858605 - 51858658
Alignment:
Q  223 tgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgtt 276  Q
    |||||||||||| |||||||||||||| |||  || ||||||||||||||||||    
T  51858605 tgatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaattgtt 51858658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 25478864 - 25478915
Alignment:
Q  223 tgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattg 274  Q
    |||||||||| ||||||||||||| || ||||||| |||||||| |||||||    
T  25478864 tgatgtttggcttatgaaggaatacggtaataaagaatcttggattaaattg 25478915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 51782797 - 51782848
Alignment:
Q  222 atgatgtttggattatgaaggaatatgggaataaagcatcttggactaaatt 273  Q
    |||||||||||||||||||||||||||| ||| ||  |||||||| ||||||    
T  51782797 atgatgtttggattatgaaggaatatggaaatgaacaatcttggaataaatt 51782848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 51407604 - 51407558
Alignment:
Q  230 tggattatgaaggaatatgggaataaagcatcttggactaaattgtt 276  Q
    |||||||||||||||||||||||| ||   |||||||||||||||||    
T  51407604 tggattatgaaggaatatgggaatgaacagtcttggactaaattgtt 51407558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 51756802 - 51756749
Alignment:
Q  223 tgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgtt 276  Q
    |||||||||||| |||||||||||||| |||  |  ||||||||||||||||||    
T  51756802 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 51756749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 51854946 - 51854999
Alignment:
Q  223 tgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgtt 276  Q
    |||||||||||| ||||| |||||||| |||  || ||||||||||||||||||    
T  51854946 tgatgtttggatcatgaaagaatatggaaatgtagaatcttggactaaattgtt 51854999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 89142 - 89194
Alignment:
Q  223 tgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattgt 275  Q
    |||| ||||| |||||||||||||||| |||||||  ||||||||||||||||    
T  89142 tgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 89194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 32381 - 32330
Alignment:
Q  223 tgatgtttggattatgaaggaatatgggaataaagcatcttggactaaattg 274  Q
    |||||||||| |||||||||||||||| |||||||  ||||||| |||||||    
T  32381 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 32330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 1078361 - 1078313
Alignment:
Q  89 tttattgcttcttttgatttgggaaacgagtcttataaaaaagttttgc 137  Q
    ||||||| |||||||||||||||||| || |||||| |||| |||||||    
T  1078361 tttattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgc 1078313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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