View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16814_low_8 (Length: 378)
Name: NF16814_low_8
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16814_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 363
Target Start/End: Complemental strand, 8826330 - 8825970
Alignment:
| Q |
8 |
catcatcaatgacagaagtccaaaaagcatcaattctgcttgaaatagatatcaaaatcagctattttccaatctctaatttccatttataatcaacttt |
107 |
Q |
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| T |
8826330 |
catcagcaatgacagaagtccaaaaagcatcaattctgcttgaaatagatatcaaaatcagctattttccaatctctaatttccatttataatcaacttt |
8826231 |
T |
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| Q |
108 |
ttatagtaatgtgacaattacattacatagtccttatccttaccttcttgcattttttccaaagcggagagaagggattttctcttagttctacccaacc |
207 |
Q |
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| T |
8826230 |
ttatagtaatgtgacaattacattacatagtc------cttaccttcttgcattttttccaaagcggagagaagggattttctcttagttctacccaacc |
8826137 |
T |
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| Q |
208 |
actgtgacattaattattattcaatgtataagaaacttatgtatgaatgtgagaaattagaaag-----------aaagtaatgtatgtatgtaccttaa |
296 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8826136 |
actgtgacattaattattattcaatgtataagaaactcatgtatgaatgtgagaaattagaaagaaaggatatacaaagtaatgtatgtatgtaccttaa |
8826037 |
T |
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| Q |
297 |
ccaattttttcaatgtgccattagacaagaaactaagagaaaccaaaagagtgatgacagttgcaac |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8826036 |
ccaattttttcaatgtgccattagacaagaaactaagagaaaccaaaagagtgatgacagttgcaac |
8825970 |
T |
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