View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16814_low_9 (Length: 369)
Name: NF16814_low_9
Description: NF16814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16814_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 353
Target Start/End: Complemental strand, 12312625 - 12312281
Alignment:
| Q |
7 |
gaaataatatagggtttttggtcatgatttagtatcatcgtggcatagaagtaggtattttatgtttgttttagtttagttttgtaaataaatttctcaa |
106 |
Q |
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| T |
12312625 |
gaaataatatagggtttttggtcatgatttagtatcattgtggcatagaagcaggtattttatgtttgttttagtttagttttgtaaataaatttctcaa |
12312526 |
T |
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| Q |
107 |
aaagtaatgaaagaacaaagaagggaaaaatccttaaagccatggaaattcacctaaaccaaaaaactatgtgactgcgctatgcatgttttttacaagt |
206 |
Q |
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| T |
12312525 |
aaagtaatgaaagaacaaagaagggaaaaatccttaaagccatggaaattcacctgaaccaaaaaactatgtgattgcgct----atattttttacaagt |
12312430 |
T |
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| Q |
207 |
ttatcattgatgatgttagagatgtagtcgttatggacattatggtgagaaaaaatggagca--atgaacaaagaaatcaaagagttggctactgtcata |
304 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | |||||||| |||| |
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| T |
12312429 |
ttatcattgatgatgttagagacatagtcgttatggacattatggtgagaaaaaatggagcaatatgaatgaagaaatcaaagaatcggctactgccata |
12312330 |
T |
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| Q |
305 |
gacaaaaattgtgtcacatgcaagataaatggggttcctaagggtattt |
353 |
Q |
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| T |
12312329 |
gacaaaaattgtgccacatgcaagataaatggggttcctaagggtattt |
12312281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 3952089 - 3952166
Alignment:
| Q |
192 |
atgttttttacaagtttatcattgatgatgttagagatgtagtcgttatggacattatggtgagaaaaaatggagcaa |
269 |
Q |
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||||||||||||||||||||| ||||||||| | | | || ||||||||||| || || |||||| ||||||||||| |
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| T |
3952089 |
atgttttttacaagtttatcaccgatgatgtttggggtataatcgttatggacgttctgatgagaagaaatggagcaa |
3952166 |
T |
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