View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_high_16 (Length: 525)
Name: NF16815_high_16
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 17 - 511
Target Start/End: Original strand, 487259 - 487753
Alignment:
| Q |
17 |
aaatataggagtactagtttgaatcttactcaaaaataaataccataccatccttaagaacgacaaaaatttggaatatactacttaccgaaaaggacaa |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
487259 |
aaatataggagtactagtttgattcttactcaaaaataaataccataccatccttaagaacgacaaaaatttggaatatactacttaccgaaaaggacaa |
487358 |
T |
|
| Q |
117 |
catcaagactaccattgggcaaatattcatatacaagaagcttctcttctccatccacacaaaatcccaaaagttttacaagatttttgtgttgaagttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
487359 |
catcaagactaccattgggcaaatattcatatacaagaagcttctcttctccatccacacaaaatcccaaaagttttacaagatttttgtgttgaagttt |
487458 |
T |
|
| Q |
217 |
caatatcagcattacctcgttaatgaactcttctgagccctgctcagagcaaattgagagccttttgattgccacttcttggccatcactaagtataccc |
316 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
487459 |
caatatcagcataacctcgttaatgaactcttccgagccctgctcagagcaaattgagagccttttgattgccacttcttggccatcactaagtataccc |
487558 |
T |
|
| Q |
317 |
tgcaaataaagaagtaaaactctatctaaagctccttatgataaccattcatgcaaaaatggtgaataaacttgaattctatttaccttgtaaacgggcc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
487559 |
tgcaaataaagaagtaaaactctatctaaagctccttatgataaccattcatgcaaaaatggtgaataaacttgaattctatttaccttgtaaacaggcc |
487658 |
T |
|
| Q |
417 |
caaagccaccttccccgagcttatttgaatccgtaaagtttctggtagccacacgaagagatgcaagatcaataaaagggaaatccttagatatt |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
487659 |
caaagccaccttccccgagcttatttgaatccgtaaagtttctggtagccacacgaagagatgcaagatcaataaaagggaaatccttagatatt |
487753 |
T |
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