View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_high_18 (Length: 508)
Name: NF16815_high_18
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 497
Target Start/End: Complemental strand, 52696169 - 52695706
Alignment:
| Q |
19 |
cttcttcttcttcaaatcaacgtaaccaactagatctggtcaataaacttgattgtactgaaattactgatttcactgtttctaagtttaaaacggttat |
118 |
Q |
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| T |
52696169 |
cttcttcttcttcaaatcaacttaaccaactagatctggtcaataaacttgattgtactgaaattactgatttcactgtttctaagtttaaaacggttat |
52696070 |
T |
|
| Q |
119 |
taacttgttaaatcgaaccggtcacgctcgttttcgtcgtgcaccttcttctcct---tgctcttcttatcaatttcaatctcaatctcatattcaacct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| |
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| T |
52696069 |
taacttgttaaatcgaaccggtcacgctcgttttcgtcgtgcaccttcttctcctccttgttcttcttatcaatttcaatctcaatctca------acct |
52695976 |
T |
|
| Q |
216 |
gagaaattcaagactcaaccacagtcaactactcttgattttgcaaaaccgattcaattagttaagtcaaatctaaatccaaatccaaatcccaatctca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52695975 |
gagaaattcaagactcaaccacagtcaactactcttgattttgcaaaaccgattcaattagttaagtcaaatc------------caaatcccaatctca |
52695888 |
T |
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| Q |
316 |
aacctgaaactaatcaatctactgatttatctgtttctcaatactccaaatcaaaggaagcttatagcatctctaccactacttcttctttcatgtccac |
415 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52695887 |
aacctaaaactaatcaatctactgatttatctgtttctcaatactccaaatcaaaggaagcttatagcatctctaccactacttcttctttcatgtccac |
52695788 |
T |
|
| Q |
416 |
catcaccggagatggaagcgtttccgacggtaaaataggtcctatcatttcctctggcaagcctcctctagcttcatctcac |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52695787 |
catcaccggagatggaagcgtttccgacggtaaaataggtcctatcatttcctctggcaagcctcctctagcttcatctcac |
52695706 |
T |
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