View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_high_19 (Length: 502)
Name: NF16815_high_19
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 51 - 485
Target Start/End: Complemental strand, 2487844 - 2487413
Alignment:
| Q |
51 |
cgagtgcttgcgttttatgagtgcatcttttttggttttaatgagtgtcatctgtcgggttctgtcgggtgaactgagtccaacggtaatcgaaaccgac |
150 |
Q |
| |
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||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2487844 |
cgagtgcttgcgttttaggagtacatcttttttggttttaatgagtgtcatctgtcgagttctgtcggatgaactgagtccaacggtaatcgaaaccgac |
2487745 |
T |
|
| Q |
151 |
caaaaaacataggagatcgggtgaatttgagggtgttgtcatggtccttagttgatggctggatactcaattgctcgcgacactgcaagacgaagtaaag |
250 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2487744 |
caaaaaacataggagatcgagtgaatttgagggtgttgtcatggtccttagttgatggctggatactcaattgctcgcgacactgcaagacgaagtaaag |
2487645 |
T |
|
| Q |
251 |
aaaaccattggtagtagtacttggttgtttctttatgaagaagttaagtacttggttgtttagttggaattgatttcactaggattggtgacatggaagt |
350 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2487644 |
aaaaccattggtagta---cttggttgtttctttatgaagaagttaagtacttggttgtttagttggaattgatttcactaggattggtgacatggaagt |
2487548 |
T |
|
| Q |
351 |
ttaagagccgttggatgtaaagcacacatattaagaatttgagtggctgcgatatcattaaaatttcaaaataaaatccggaaaacaagtaacagctagg |
450 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2487547 |
ttaagagccgttggatgtaatgcacacatattaagaatttgagtggctgcgatatcattaaaatttcaaaataaaatccggaaaacaggtaacagctagg |
2487448 |
T |
|
| Q |
451 |
gcacgcagttatttaagactttaacctatatatat |
485 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
2487447 |
gcacgcagttatttaagactttaacctatatatat |
2487413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 51 - 485
Target Start/End: Complemental strand, 27090430 - 27089999
Alignment:
| Q |
51 |
cgagtgcttgcgttttatgagtgcatcttttttggttttaatgagtgtcatctgtcgggttctgtcgggtgaactgagtccaacggtaatcgaaaccgac |
150 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27090430 |
cgagtgcttgcgttttaggagtacatcttttttggttttaatgagtgtcatctgtcgagttctgtcggatgaactgagtccaacggtaatcgaaaccgac |
27090331 |
T |
|
| Q |
151 |
caaaaaacataggagatcgggtgaatttgagggtgttgtcatggtccttagttgatggctggatactcaattgctcgcgacactgcaagacgaagtaaag |
250 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27090330 |
caaaaaacataggagatcgagtgaatttgagggtgttgtcatggtccttagttgatggctggatactcaattgctcgcgacactgcaagacgaagtaaag |
27090231 |
T |
|
| Q |
251 |
aaaaccattggtagtagtacttggttgtttctttatgaagaagttaagtacttggttgtttagttggaattgatttcactaggattggtgacatggaagt |
350 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27090230 |
aaaaccattggtagta---cttggttgtttctttatgaagaagttaagtacttggttgtttagttggaattgatttcactaggattggtgacatggaagt |
27090134 |
T |
|
| Q |
351 |
ttaagagccgttggatgtaaagcacacatattaagaatttgagtggctgcgatatcattaaaatttcaaaataaaatccggaaaacaagtaacagctagg |
450 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27090133 |
ttaagagccgttggatgtaatgcacacatattaagaatttgagtggctgcgatatcattaaaatttcaaaataaaatccggaaaacaggtaacagctagg |
27090034 |
T |
|
| Q |
451 |
gcacgcagttatttaagactttaacctatatatat |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
27090033 |
gcacgcagttatttaagactttaacctatatatat |
27089999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 376
Target Start/End: Original strand, 19168492 - 19168554
Alignment:
| Q |
314 |
ttggaattgatttcactaggattggtgacatggaagtttaagagccgttggatgtaaagcaca |
376 |
Q |
| |
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||||| ||| |||||||||||||| ||||||||||||||| | ||||||||| ||| ||||| |
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|
| T |
19168492 |
ttggatttggtttcactaggattgctgacatggaagtttagcaaccgttggatttaatgcaca |
19168554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 20501252 - 20501304
Alignment:
| Q |
314 |
ttggaattgatttcactaggattggtgacatggaagtttaagagccgttggat |
366 |
Q |
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||||| ||| |||||||||||||| ||||||||||||||| | ||||||||| |
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|
| T |
20501252 |
ttggatttggtttcactaggattgctgacatggaagtttagcaaccgttggat |
20501304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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