View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_high_2 (Length: 871)
Name: NF16815_high_2
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 790; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 17 - 871
Target Start/End: Original strand, 31997928 - 31998782
Alignment:
| Q |
17 |
acttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgctaaatttcatggtaacagttggtttgtttatc |
116 |
Q |
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| T |
31997928 |
acttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgctaaatttcttggtcacagttggtttgtttatc |
31998027 |
T |
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| Q |
117 |
tttctggctctgcataagaattggattttaannnnnnnaatcaaagtcttttgacctatttcactctggagtaattagtttcttacctattggacaattg |
216 |
Q |
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| T |
31998028 |
tttctggctctgcataagaattggattttaatttttttaatcgaagtcttttgacctatttcactctggagtaattagtttcttacctattggacaattg |
31998127 |
T |
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| Q |
217 |
agaaatacattaattggagacaacactgtcaatcaactgtttactctcactctttggcgcattcggataaactgcaatgatattgtattcaacaaaggtc |
316 |
Q |
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| T |
31998128 |
agaaatacattaattggagacaacactgtcaatcaactgtttactctcactctttggcgcattcggataaactgcaatgatgttgtattcaacaaaggtc |
31998227 |
T |
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| Q |
317 |
agatccatgctttaaaatcaagaagtgtctacttttgctgagcacttcaatcaatttgcaaaatccgagcctgcagcaagagtatatcagatcacgttcg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31998228 |
agatccatgctttaaaatcaagaagtgtctacttttgctgagcacttcaatcaatttgcaaaatccgagcctgcagcaagagtatatctgatcacgttcg |
31998327 |
T |
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| Q |
417 |
agtgaatactacaaatgggagtgcttcgtcagttggtatccttaaaatcaatattgatgcaggctgttttgaggatcatttcacttgctggggttgaaag |
516 |
Q |
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| T |
31998328 |
agtgaatactacaaatgggagtgcttcaccagttggtatccttaaaatcaatattcatgcaggctgttttgaggatcatttcacttgctggggttgaaag |
31998427 |
T |
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| Q |
517 |
cgtggaatcatgaagggatgctttctgcagctgcaacaaagagggagatgtgacaaaggctccagctttgccggacattatgggactgcgttggtgtctc |
616 |
Q |
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| T |
31998428 |
cgtggaatcatgaagggatgctttctgcagctgcaacaaagagggagatgtgacaaaggctccagttttgccggacattatgggactgcgttggtgtctc |
31998527 |
T |
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| Q |
617 |
cggtggatgtctacacaaaatatgccaaatgtttgtgaactgcgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtctgactgtcatgaa |
716 |
Q |
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| T |
31998528 |
cggtggatgtctacacaaaatatgccaaatgtttgtgaactgcgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtttgactgtcatgaa |
31998627 |
T |
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| Q |
717 |
ttgttgttcagtatgtctaatgttagtttaatttatgttaagagatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaat |
816 |
Q |
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| T |
31998628 |
ttgttgttcagtatgtctaatgttagtttaatttatgttaagtgatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaat |
31998727 |
T |
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| Q |
817 |
tgtattctctggtctctttgattacacaactaaatgttgatataatttgtgttgt |
871 |
Q |
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| T |
31998728 |
tgtattctctggtctctttgattacacaactaaatgttgatataatttgtgttgt |
31998782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 455 - 563
Target Start/End: Original strand, 42612827 - 42612936
Alignment:
| Q |
455 |
tccttaaaatcaatattgatgcaggctgttttgaggatcatttcacttgctgggg-ttgaaagcgtggaatcatgaagggatgctttctgcagctgcaac |
553 |
Q |
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| T |
42612827 |
tccttaaaattaatattgatgcaggttgttttgaggaacatttcacttgttggggattgattgtgaggaaccatgaagggttggtttctgcagctgcaac |
42612926 |
T |
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| Q |
554 |
aaagagggag |
563 |
Q |
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| T |
42612927 |
aaagagggag |
42612936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 704 - 813
Target Start/End: Original strand, 42613096 - 42613200
Alignment:
| Q |
704 |
tgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgttaagagatgtaacaatagagttgctcatagttttgtaggaattgctaga |
803 |
Q |
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|||||| | ||||||| | |||||||||||||||||||||||| || |||||||||||||| ||||| ||||||| | || ||||||||||||||| |
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| T |
42613096 |
tgactgacttgaattgatattcagtatgtctaatgttagtttatgtt----taagagatgtaacagtagagctgctcat-ggttggtaggaattgctaga |
42613190 |
T |
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| Q |
804 |
aattgtggta |
813 |
Q |
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| T |
42613191 |
aactgtggta |
42613200 |
T |
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