View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_high_21 (Length: 468)
Name: NF16815_high_21
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 29379291 - 29378830
Alignment:
| Q |
1 |
tttatttacactatcaatttgtactctttttcttagaggatcaatttctacttatgaaattcataaaatttctttatgaagaggacatactcttattcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29379291 |
tttatttacactatcaatttgtactctttttcttagaggatcaatttctacttatgaaattcataaaatttctttatgaagaggacatactcttattcat |
29379192 |
T |
|
| Q |
101 |
aactttgttgctataatcctatgaagcacaaatgtcccggtgtcagatatttatcgtgttggcgtatatgtgttcgtgtcgtgtgtgagcttcatagcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29379191 |
aactttgttgctataatcctatgaagcacaaatgttccggtgtcagatatgtatcgtgttggcgtatatgtattcgtgtcgtgtgtgagcttcatagcta |
29379092 |
T |
|
| Q |
201 |
taacctatagcttcaaccttc-catctttgttagcataataaggtcactagactgtctaaactgtacatcaagtcatcaaggtttttggctggtcattct |
299 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29379091 |
taacctatagcttcaaccttctcatctttgttagcataataaggtcactagactgtctaaactgtacatcaagtcatcaaggtttttggctggtcattct |
29378992 |
T |
|
| Q |
300 |
cttataagctattgtcaacaatttcnnnnnnnnnnnnnnnnnnccactgtaatccaatagttttgtaaacataaactatttggagtgccaatgatccttg |
399 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29378991 |
cttataagctattgtcaacaatttcatgatgatgatgatgatgccactgtaatccaatagttttgtaaacataaactatttggagtgccaatgatccttg |
29378892 |
T |
|
| Q |
400 |
accaaacccattctttctcccctacaagttgtatttccgccaactgtcacaagtgatgatgt |
461 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
29378891 |
accaaacccattctttctcccctacaagttgtatttctgccaactgtcacaagtaatgatgt |
29378830 |
T |
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