View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_high_25 (Length: 440)
Name: NF16815_high_25
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_25 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 47127690 - 47128106
Alignment:
| Q |
18 |
atggctaactagttgatgatatcctgaatcattcacagcagcatatgctttagccaactgccatacagtggctgctactccttcatgtgatggagtgaaa |
117 |
Q |
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| T |
47127690 |
atggctaactagttgatgatatcctgaatcattcacagcagcatatgctttagccaactgccatacagtggctgctactccttcatgtgatggagtgaaa |
47127789 |
T |
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| Q |
118 |
actttactgacagctccatgttgttcaccttgtggatgaggtaagcttaattcaatagccagtggcttcaatgtgccatcatcttgtagaaataggagtg |
217 |
Q |
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| T |
47127790 |
actttactgacagctccatgttgttcaccttgtggatgaggtaagcttaattcaatagccagtggcttcaatgtgccatcatcttgtagaaataggagtg |
47127889 |
T |
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| Q |
218 |
ttctagtggcataagtcttggtgttggtagagtttattctacttaggtatggcatcaaagcatcatgatgatctaatatatagagcttatcactttcaag |
317 |
Q |
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| T |
47127890 |
ttctggtggcataagtcttggtgttggtagagtttattctacttaggtatggcatcaaagcatcatgatgatctaatatatagagcttatcactttcaag |
47127989 |
T |
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| Q |
318 |
agcctgcaacataaagaagtttgattcttgttagcgatatatgtagagtttataacattcaacatgaatttgacttcattttcatacaacttttagtcaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47127990 |
agcctgcaacataaagaagtttgattcttgttagcgatat------tgattataacattcaacatgaatttgacttcattttcatacaacttttagtcaa |
47128083 |
T |
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| Q |
418 |
tgaataagtgaattttgatctct |
440 |
Q |
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| T |
47128084 |
tgaataagtgaattttgatctct |
47128106 |
T |
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