View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_high_30 (Length: 419)
Name: NF16815_high_30
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 23664404 - 23664004
Alignment:
| Q |
1 |
agtgatcatagttgaagttgtgaccaatcgttcaaaacttcatatctttgatccattcggtcgaaagttacaagagatgagtacttgaagagcctgataa |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23664404 |
agtgatcatagttgaagttgtgaccaatcgttcgaaacttcatatctttgatccattcggtcgaaagttacaagatatgagtacttgaagagcctgataa |
23664305 |
T |
|
| Q |
101 |
atcattccaagaatagtattgttgttggttattatgttcagagacaccaagagatgttcttgaaaaatttaaagctcgattttcttccattttaaccggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23664304 |
atcattccaagaatagtattgttgttggttattatgttcagagacaccaagagatgttcttgaaaaatttaaagctcgattttcttccattttaaccggt |
23664205 |
T |
|
| Q |
201 |
ggctcttgattagccctagagtttgaagctatatctctaacaaatccagatgctgcagcagcttcaatattactttctccttgaaaagtatatggattat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23664204 |
ggctcttgattagccctagagtttgaagctatatctctaacaaatccagatgctgcagcagcttcaatattactttctccttgaaaagtatatggattat |
23664105 |
T |
|
| Q |
301 |
ttccagaagagtttgattcgaaagtattcaagaaaggaaattgctgcaaattacgccatggttcaactccgacacctccagcaacagaagaagcagaaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23664104 |
ttccagaagagtttgattcgaaagtattcaagaaaggaaattgctgcaaattacgccatggttcaactccgacacctccagcaacagaagaagcagaaac |
23664005 |
T |
|
| Q |
401 |
a |
401 |
Q |
| |
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| |
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|
| T |
23664004 |
a |
23664004 |
T |
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