View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16815_high_32 (Length: 405)

Name: NF16815_high_32
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16815_high_32
NF16815_high_32
[»] chr3 (3 HSPs)
chr3 (1-388)||(13796174-13796560)
chr3 (134-260)||(20593702-20593828)
chr3 (10-78)||(20593578-20593646)
[»] chr8 (1 HSPs)
chr8 (13-289)||(13470517-13470787)
[»] chr5 (1 HSPs)
chr5 (13-328)||(28584197-28584512)
[»] chr7 (1 HSPs)
chr7 (10-180)||(9716920-9717090)
[»] chr4 (2 HSPs)
chr4 (10-180)||(13583187-13583357)
chr4 (107-313)||(23970288-23970493)
[»] chr6 (1 HSPs)
chr6 (9-157)||(15526058-15526206)
[»] chr2 (2 HSPs)
chr2 (253-314)||(37174825-37174886)
chr2 (9-179)||(37174581-37174751)
[»] scaffold0102 (1 HSPs)
scaffold0102 (9-291)||(2481-2763)


Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 13796560 - 13796174
Alignment:
Q  1 cagtttattggtgataattatcattcctagtccatgaagatgcgaagagcattggatatgaagaacaagtttaagtttgtgtacggttcaattccaattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  13796560 cagtttattggtgataattatcattcctagtccatgaagatgcgaagagcattggctatgaagaacaagtttaagtttgtggacggttcaattccaattc 13796461  T
Q  101 catacaaagatgatttgaatcatgctgcatggaaaaggtgtaacaatcttgttcatacatagataatcaattaaatttcatcgacaatttctcaaagcgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13796460 catacaaagatgatttgaatcatgctgcatggaaaaggtgtaacaatcttgttcatacatagataatcaattaaatttcatcgacaattgctcaaagcgt 13796361  T
Q  201 tgtgttcatataaaactttgttgatatatggaacgatcttaaggattgatccatgagaggtgatcgtattagagtggcacaattacaacaaaagattgct 300  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |    
T  13796360 tgtgttcatataaaatgttgttgatatgtggaacgatcttaaggattgattcatgagaggtgatcgtattagagtggcacaattacaacaaaagattatt 13796261  T
Q  301 gatttgaagcaagggaatcgaaagattttagactattttcacttatatgagaggtttgtgggaaaactagatcttaataggcttatgc 388  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||  |||||||||||||    
T  13796260 gatttaaagcaagggaatcgaaagattttagacta-tttcacttatacgagaggtttgtgggaaaactagatcagaataggcttatgc 13796174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 260
Target Start/End: Original strand, 20593702 - 20593828
Alignment:
Q  134 aaaggtgtaacaatcttgttcatacatagataatcaattaaatttcatcgacaatttctcaaagcgttgtgttcatataaaactttgttgatatatggaa 233  Q
    ||||||| || ||||||||| |||| | |||||||||||  |||||  |  ||||| ||||||| || ||||||||| ||||  |||||||||| || ||    
T  20593702 aaaggtgcaataatcttgtttatacttggataatcaattctatttcgccttcaattgctcaaagtgtagtgttcatagaaaatgttgttgatatgtgaaa 20593801  T
Q  234 cgatcttaaggattgatccatgagagg 260  Q
     |||||||| ||| ||| |||||||||    
T  20593802 tgatcttaaagatagattcatgagagg 20593828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 20593578 - 20593646
Alignment:
Q  10 ggtgataattatcattcctagtccatgaagatgcgaagagcattggatatgaagaacaagtttaagttt 78  Q
    ||||| ||||||||| | | |||||||||||||||||||||  | | |||||||||||| || ||||||    
T  20593578 ggtgagaattatcatgcgtggtccatgaagatgcgaagagctcttgctatgaagaacaaattcaagttt 20593646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 289
Target Start/End: Original strand, 13470517 - 13470787
Alignment:
Q  13 gataattatcattcctagtccatgaagatgcgaagagcattggatatgaagaacaagtttaagtttgtgtacggttcaattccaattccatacaaagatg 112  Q
    |||||||||||||| | ||||||||| |||||||||||||||| ||| |||||||| || || |||||| ||| || ||||| |||| || |  |||||     
T  13470517 gataattatcattcatggtccatgaa-atgcgaagagcattggctataaagaacaaattcaaatttgtggacgcttgaattcgaatttcaaatgaagatt 13470615  T
Q  113 atttgaatcatgctgcatggaaaaggtgtaacaatcttgttcatacatagataatcaattaaatttcatcgacaatttctcaaagcgttgtgttcatata 212  Q
    ||||||||  |||||||||| ||| ||||||||||||||||||||| | ||||||||||| ||||||| || ||||| ||||||| |||||||||||| |    
T  13470616 atttgaattgtgctgcatgggaaatgtgtaacaatcttgttcatacctggataatcaattcaatttcaccgtcaattgctcaaagtgttgtgttcataga 13470715  T
Q  213 aaactttgttgatatatggaacgatcttaaggattgatccatgagaggtgatcgtattagagtggcacaattacaac 289  Q
    |||   ||||||||| || || |||||||||||  ||| ||||||||| |||| ||||||||||  |||||||||||    
T  13470716 aaa---tgttgatatgtgaaatgatcttaaggaccgattcatgagaggagatcatattagagtg--acaattacaac 13470787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 328
Target Start/End: Complemental strand, 28584512 - 28584197
Alignment:
Q  13 gataattatcattcctagtccatgaagatgcgaagagcattggatatgaagaacaagtttaagtttgtgtacggttcaattccaattccatacaaagatg 112  Q
    ||||| ||||| |||| ||||||||||||||||||||| |||| ||||||||||||||| || || ||  ||||||  || ||||||||| |   |||||    
T  28584512 gataactatcaatcctggtccatgaagatgcgaagagctttggctatgaagaacaagttcaaattcgtagacggttttataccaattccagatgcagatg 28584413  T
Q  113 atttgaatcatgctgcatggaaaaggtgtaacaatcttgttcatacatagataatcaattaaatttcatcgacaatttctcaaagcgttgtgttcatata 212  Q
    | ||||||  |||||| |   ||||||| || |||||||||||||| | |||||||||||   ||||| || ||||| |||| || ||||| |  ||| |    
T  28584412 acttgaattgtgctgcttacgaaaggtgcaataatcttgttcatacctggataatcaattccgtttcaccgtcaattgctcagagtgttgtctctataga 28584313  T
Q  213 aaactttgttgatatatggaacgatcttaaggattgatccatgagaggtgatcgtattagagtggcacaattacaacaaaagattgctgatttgaagcaa 312  Q
    |||  |||||||||| ||||| |||||||| ||| | |  |||||| ||| |||||||||||| |||||||| |||||  | | |||  |||||||||||    
T  28584312 aaatgttgttgatatgtggaatgatcttaaagatcgttttatgagatgtggtcgtattagagtagcacaattgcaacaggaaaatgcaaatttgaagcaa 28584213  T
Q  313 gggaatcgaaagattt 328  Q
    ||||||||||||||||    
T  28584212 gggaatcgaaagattt 28584197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 9717090 - 9716920
Alignment:
Q  10 ggtgataattatcattcctagtccatgaagatgcgaagagcattggatatgaagaacaagtttaagtttgtgtacggttcaattccaattccatacaaag 109  Q
    |||||||| ||||| | || |||||| ||||||||||||||||||| ||||||||||||||| ||||||||| ||   | |||||||||| || |  |||    
T  9717090 ggtgataactatcaatactggtccataaagatgcgaagagcattggctatgaagaacaagttcaagtttgtggacaactaaattccaattacaaatgaag 9716991  T
Q  110 atgatttgaatcatgctgcatggaaaaggtgtaacaatcttgttcatacatagataatcaattaaatttca 180  Q
    ||||||||||| ||| |||||||  ||||||||||||||||||| |||| ||||||||||||| |||||||    
T  9716990 atgatttgaattatgatgcatgggtaaggtgtaacaatcttgttaatacctagataatcaattcaatttca 9716920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 13583357 - 13583187
Alignment:
Q  10 ggtgataattatcattcctagtccatgaagatgcgaagagcattggatatgaagaacaagtttaagtttgtgtacggttcaattccaattccatacaaag 109  Q
    |||||||| ||||| | || |||||| ||||||||||||||||||| ||||||||||||||| ||||||||| ||   | |||||||||| || |  |||    
T  13583357 ggtgataactatcaatactggtccataaagatgcgaagagcattggctatgaagaacaagttcaagtttgtggacaactaaattccaattacaaatgaag 13583258  T
Q  110 atgatttgaatcatgctgcatggaaaaggtgtaacaatcttgttcatacatagataatcaattaaatttca 180  Q
    ||||||||||| ||| |||||||  ||||||||||||||||||| |||| ||||||||||||| |||||||    
T  13583257 atgatttgaattatgatgcatgggtaaggtgtaacaatcttgttaatacctagataatcaattcaatttca 13583187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 107 - 313
Target Start/End: Original strand, 23970288 - 23970493
Alignment:
Q  107 aagatgatttgaatcatgctgcatggaaaaggtgtaacaatcttgttcatacatagataatcaattaaatttcatcgacaatttctcaaagcgttgtgtt 206  Q
    |||||||||||||||    ||||||| ||||||| || |||||||||||||||  |||||||||||  ||||| |   | ||| ||||||| ||||||||    
T  23970288 aagatgatttgaatcggattgcatgggaaaggtgcaataatcttgttcatacacggataatcaattctatttcgttatctattgctcaaagtgttgtgtt 23970387  T
Q  207 catataaaactttgttgatatatggaacgatcttaaggattgatccatgagaggtgatcgtattagagtggcacaattacaacaaaagattgctgatttg 306  Q
     ||| ||||  |||||||||| ||||| |||||| ||||||| |  |||||||| ||| | |||||||| |||||||| ||  || | |||||| | |||    
T  23970388 tatagaaaatgttgttgatatgtggaatgatctt-aggattgttttatgagaggagatagaattagagtagcacaattgcagtaagaaattgctaacttg 23970486  T
Q  307 aagcaag 313  Q
    |||||||    
T  23970487 aagcaag 23970493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 157
Target Start/End: Complemental strand, 15526206 - 15526058
Alignment:
Q  9 tggtgataattatcattcctagtccatgaagatgcgaagagcattggatatgaagaacaagtttaagtttgtgtacggttcaattccaattccatacaaa 108  Q
    ||||||||| || ||| | | ||||||||||||| |||||||||||| ||||||||| ||||| ||||||||  | ||||| || ||||||||| |  |     
T  15526206 tggtgataactaccatgcttggtccatgaagatgagaagagcattggctatgaagaaaaagttcaagtttgttgatggttctataccaattccagatgat 15526107  T
Q  109 gatgatttgaatcatgctgcatggaaaaggtgtaacaatcttgttcata 157  Q
    |||||||||||||    ||| ||| ||||||| || |||||||||||||    
T  15526106 gatgatttgaatcggagtgcttgggaaaggtgcaataatcttgttcata 15526058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 37174825 - 37174886
Alignment:
Q  253 atgagaggtgatcgtattagagtggcacaattacaacaaaagattgctgatttgaagcaagg 314  Q
    ||||||||||||||||||||||| || |||||||| ||| |||||||| ||||||| |||||    
T  37174825 atgagaggtgatcgtattagagttgctcaattacatcaagagattgctaatttgaaacaagg 37174886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 37174581 - 37174751
Alignment:
Q  9 tggtgataattatcattcctagtccatgaagatgcgaagagcattggatatgaagaacaagtttaagtttgtgtacggttcaattccaattccatacaaa 108  Q
    |||||| ||||||||||| | ||| ||||| ||| |||||||| |||  |||||||||||||  ||||||||  | ||||| || ||||| ||| |  ||    
T  37174581 tggtgaaaattatcattcttggtcaatgaaaatgagaagagcactggcaatgaagaacaagtacaagtttgttgatggttccataccaataccagatgaa 37174680  T
Q  109 gatgatttgaatcatgctgcatggaaaaggtgtaacaatcttgttcatacatagataatcaattaaatttc 179  Q
    |||||| | |||| | | || ||| ||||||| || |||||||||||||| | ||| || |||| ||||||    
T  37174681 gatgatctcaatcgtccagcttgggaaaggtgcaataatcttgttcatacttggattattaattcaatttc 37174751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 291
Target Start/End: Original strand, 2481 - 2763
Alignment:
Q  9 tggtgataattatcattcctagtccatgaagatgcgaagagcattggatatgaagaacaagtttaagtttgtgtacggttcaattccaattccatacaaa 108  Q
    |||||| ||||||||||| | ||| ||||||||||| ||||| ||||  ||||| ||||| || ||||||||  | || || |||  | ||||| |  ||    
T  2481 tggtgacaattatcattcttggtcaatgaagatgcgtagagctttggcgatgaaaaacaaattcaagtttgttgatggatctattgaagttccagatgaa 2580  T
Q  109 gatgatttgaatcatgctgcatggaaaaggtgtaacaatcttgttcatacatagataatcaattaaatttcatcgacaatttctcaaagcgttgtgttca 208  Q
     | ||| | |||| |||||| ||| ||||||| || |||||||||||||| | |||||| ||||  |||||  |  ||||| | ||||| ||||| ||||    
T  2581 cacgatctcaatcgtgctgcttgggaaaggtgcaataatcttgttcatacttggataattaattcgatttcgccatcaattgcgcaaagtgttgttttca 2680  T
Q  209 tataaaactttgttgatatatggaacgatcttaaggattgatccatgagaggtgatcgtattagagtggcacaattacaacaa 291  Q
    |  | ||   | | ||||| ||||| ||||| || ||| | | ||||||||| ||||||||||||||||| ||||| ||||||    
T  2681 ttgagaatgctatggatatgtggaatgatctcaaagatcgtttcatgagaggagatcgtattagagtggctcaattgcaacaa 2763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University