View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_high_34 (Length: 376)
Name: NF16815_high_34
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 358
Target Start/End: Original strand, 29379313 - 29379666
Alignment:
| Q |
15 |
tattatagctattatgttagatcacagcattactttataaacttgtttgcactgtggttaaatagtaaaatatgataggttatgaattcattacaattac |
114 |
Q |
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| T |
29379313 |
tattatagctattatgttagatcacagcattactttataaacttgtttgcactgtggttaaatagtaaaatatgataggttatgaattcattacaattac |
29379412 |
T |
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| Q |
115 |
tacatga---------tcttgaaatatttgaaacataattgtgttccgaatcggataataaagctataggttttagctatgaaaggtggttccacggtgg |
205 |
Q |
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| T |
29379413 |
tacatgatttatactctcttgaaatatttgaaacaaaattgtgttccgaatcggataataaagctataggttatagctatgaaaggtggttccacggtgg |
29379512 |
T |
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| Q |
206 |
aatcacctttgt--nnnnnnnnnnnnnnttcggtatttcaannnnnnnnnaaaagatgagtctgtcatggaaggaagaaccgattcatgcagaataaaag |
303 |
Q |
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| T |
29379513 |
aatcacctttgtaaaaaaaaatgaaaaattcggtatttcaa-tttttttaaaaagatgagtctgtcatggaaggaagaaccgattcatgcagaataaaag |
29379611 |
T |
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| Q |
304 |
tggtttacagagggtaaacaaaccgcaaatctggttcagagaaaaccgataaact |
358 |
Q |
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| T |
29379612 |
tggtttacagagggtaaacaaaccgcaaatctggttcagagaaaaccgataaact |
29379666 |
T |
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