View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16815_high_36 (Length: 361)
Name: NF16815_high_36
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_36 |
 | |
|
| [»] scaffold0891 (2 HSPs) |
| | |
|
| [»] scaffold1335 (1 HSPs) |
| | |
|
| [»] scaffold2086 (1 HSPs) |
| | |
|
| [»] scaffold1996 (1 HSPs) |
| | |
|
| [»] scaffold0654 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0891 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 5 - 346
Target Start/End: Original strand, 3848 - 4188
Alignment:
| Q |
5 |
accaaacagttgaactcaagtagttaataagcttcaccaaatgacaaatcgtttgggagaatcagaattcaattcttggatggaacaattgttggtaaaa |
104 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3848 |
accaaacagttgaactcaaatagttaataagcttcaccaaatgacaaatcgtttgggagaaccagaattcaattcttggatggaacaattgttggtaaaa |
3947 |
T |
|
| Q |
105 |
ctatacttatctcacaaccaaactctagattatcagaggaaagagctaagagaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3948 |
ctatacttatctcacaaccaaactctagattatcagaggaaagagctaagagaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagac |
4047 |
T |
|
| Q |
205 |
aaagtgcttggagtggaagaagaaagctagaactaatttgaggggatcatcatacaataatttccagaagtttatcaaagaggttattgataataaagct |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4048 |
aaagtgcttggagtggaagaagaaagctagaactaatttga-gggatcatcatacaataatttccagaagtttatcaaagaggttattgataataaagct |
4146 |
T |
|
| Q |
305 |
atttgaattccaaatacaagtttagtatggtctatgtatttt |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4147 |
atttgaattccaaatacaagtttagtatggtctatgtatttt |
4188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 3614 - 3687
Alignment:
| Q |
160 |
ttgtgatggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagct |
232 |
Q |
| |
|
|||| |||||||||||| || ||||||||| | ||||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
3614 |
ttgtaatggaaatgatgaaacgagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaagaaagct |
3687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 155 - 346
Target Start/End: Complemental strand, 35774482 - 35774282
Alignment:
| Q |
155 |
agaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagctagaa------ctaatttgagg |
247 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
35774482 |
agaacttgttgtgcaaatgatggaaggagaaaagggaaaagaaatgagacacaagtgcttggagtggaagaagaaagctagaaaagctactaatttgggt |
35774383 |
T |
|
| Q |
248 |
ggatcatcatacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttag--tatggtctatgtattt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| || || |||||||||||||| | |||||||||||| ||| |||||||||| ||||| |
|
|
| T |
35774382 |
ggatcatcatacaataatttccagaagttaatcaaagaggttcttcatcataaagctatttgagtcccaaatacaagtctagtatatggtctatatattt |
35774283 |
T |
|
| Q |
346 |
t |
346 |
Q |
| |
|
| |
|
|
| T |
35774282 |
t |
35774282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 156 - 289
Target Start/End: Complemental strand, 35848262 - 35848122
Alignment:
| Q |
156 |
gaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagctaga------actaatttgaggg |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | ||||| |||||| |||| | |||| ||||||||||||||||| | ||||||||| | | |
|
|
| T |
35848262 |
gaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttgggag |
35848163 |
T |
|
| Q |
249 |
gatcatcatacaataatttccagaagtttatcaaagaggtt |
289 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
35848162 |
gatcatcatacaataatttccataagttaatcaaagaggtt |
35848122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 145 - 268
Target Start/End: Complemental strand, 35865944 - 35865814
Alignment:
| Q |
145 |
aagagctaagagaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagctaga------ac |
237 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| | | ||||| |||||| |||| | |||| ||||||||||||||||| | || |
|
|
| T |
35865944 |
aagagataagagaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctac |
35865845 |
T |
|
| Q |
238 |
taatttgaggggatcatcatacaataatttc |
268 |
Q |
| |
|
||||||| | ||||||||||||| ||||||| |
|
|
| T |
35865844 |
taatttgggaggatcatcatacattaatttc |
35865814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 40950980 - 40950878
Alignment:
| Q |
14 |
ttgaactcaagtagttaataagcttcaccaaatgacaaatcgtttgggagaa-tcagaattcaattcttggatggaacaattgttggtaaaactatactt |
112 |
Q |
| |
|
|||||||||||| ||||| | || |||||||||||||||||||| |||| ||| ||||||||| ||||||| ||||||||||||| | |||||| || |
|
|
| T |
40950980 |
ttgaactcaagtgattaatgatctcaaccaaatgacaaatcgtttgaaagaactca-aattcaatttttggatgaaacaattgttggtcagactatattt |
40950882 |
T |
|
| Q |
113 |
atct |
116 |
Q |
| |
|
|||| |
|
|
| T |
40950881 |
atct |
40950878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 35220738 - 35220689
Alignment:
| Q |
18 |
actcaagtagttaataagcttcaccaaatgacaaatcgtttgggagaatc |
67 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
35220738 |
actcatgtggttaataagcttcaccaaatgacgaatcgtttgggataatc |
35220689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 34199240 - 34199194
Alignment:
| Q |
19 |
ctcaagtagttaataagcttcaccaaatgacaaatcgtttgggagaa |
65 |
Q |
| |
|
|||||||||||||| |||| ||||||| ||| ||||||||||||||| |
|
|
| T |
34199240 |
ctcaagtagttaatgagctccaccaaaggacgaatcgtttgggagaa |
34199194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 35754369 - 35754280
Alignment:
| Q |
145 |
aagagctaagagaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagcta |
233 |
Q |
| |
|
||||| ||| ||||||||| ||||||||||| |||||||||||| | || || ||| || |||| || | ||||||||||||||||||| |
|
|
| T |
35754369 |
aagagataacagaacttgtactggaaatgatgaaaggagaaaagggaaaacaaatgaaacaaaagagcatagagtggaagaagaaagcta |
35754280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 156 - 289
Target Start/End: Original strand, 1 - 141
Alignment:
| Q |
156 |
gaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagctaga------actaatttgaggg |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | ||||| |||||| |||| | |||| ||||||||||||||||| | ||||||||| | | |
|
|
| T |
1 |
gaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttgggag |
100 |
T |
|
| Q |
249 |
gatcatcatacaataatttccagaagtttatcaaagaggtt |
289 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
101 |
gatcatcatacaataatttccataagttaatcaaagaggtt |
141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 472 - 551
Alignment:
| Q |
155 |
agaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagcta |
233 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
472 |
agaaattgtgatggaaatgatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaaagcta |
551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 472 - 551
Alignment:
| Q |
155 |
agaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagcta |
233 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
472 |
agaaattgtgatggaaatgatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaaagcta |
551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 40930673 - 40930746
Alignment:
| Q |
43 |
aaatgacaaatcgtttgggagaatcagaattcaattcttggatggaacaattgttggtaaaactatacttatct |
116 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||| ||||||||||| ||||||| || || ||||||||||||||| |
|
|
| T |
40930673 |
aaatgacgaatcgtttgagagaatccgaatttgattcttggatgaaacaattatttgtcaaactatacttatct |
40930746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 38360850 - 38360918
Alignment:
| Q |
69 |
gaattcaattcttggatggaacaattgttggtaaaactatacttatctcacaaccaaactctagattat |
137 |
Q |
| |
|
||||||||||||| ||||||| |||| |||| ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
38360850 |
gaattcaattcttagatggaataattcttggaccaactatacttacctcacaatcaaactctagattat |
38360918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 38276123 - 38276166
Alignment:
| Q |
1 |
tttaaccaaacagttgaactcaagtagttaataagcttcaccaa |
44 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
38276123 |
tttaatcaaacaattgaactcaagtagttaatgagcttcaccaa |
38276166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 3656 - 3618
Alignment:
| Q |
27 |
gttaataagcttcaccaaatgacaaatcgtttgggagaa |
65 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
3656 |
gttaatgagctttaccaaatgacaaatcgtttgggagaa |
3618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1722810 - 1722854
Alignment:
| Q |
1 |
tttaaccaaacagttgaactcaagtagttaataagcttcaccaaa |
45 |
Q |
| |
|
|||||| ||||| |||||||||||| |||||| |||||||||||| |
|
|
| T |
1722810 |
tttaactaaacaattgaactcaagttgttaatgagcttcaccaaa |
1722854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University