View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16815_high_38 (Length: 358)
Name: NF16815_high_38
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_38 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 188 - 341
Target Start/End: Original strand, 21576417 - 21576570
Alignment:
| Q |
188 |
cgacagattcatttttgaggtatctatctatatgctactgatttactcttctttcttgattttattttttgttcaaaattggtaaagttttattgtatga |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21576417 |
cgacagattcatttttgaggtatctatctatatgctactgatttactcttctttcttgattttattttttgttcaaaattggtaaagttttattgtatga |
21576516 |
T |
|
| Q |
288 |
attaactgattcaatttgggggaattccatacctcctttttctatgttttattt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21576517 |
attaactgattcaatttgggggaattccatacctcctttttctatgttttattt |
21576570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 21576227 - 21576362
Alignment:
| Q |
1 |
tttggttgaacaaaacaaagtattgtacaaattaagaaacaaatctgcaac---aacaacagcagttgggtatggatttgtttcaacaactgacctccgt |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21576227 |
tttggttgaacaaaacaaagtattgtacaaattaagaaacaaatctgcaacaacaacaacagcagttgggtatggatttgtttcaacaactgacctccgt |
21576326 |
T |
|
| Q |
98 |
tgactggcaacaagaatccttccctgcttatcaaga |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
21576327 |
tgactggcaacaagaatccttccctgcttatcaaga |
21576362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 21583062 - 21583117
Alignment:
| Q |
69 |
atggatttgtttcaacaactgacctccgttgactggcaacaagaatccttccctgc |
124 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
21583062 |
atggattttgttcaacaactgacttcccttgactggcaacaagaatcctaccctgc |
21583117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University