View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16815_high_39 (Length: 352)

Name: NF16815_high_39
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16815_high_39
NF16815_high_39
[»] chr4 (4 HSPs)
chr4 (15-236)||(6011354-6011575)
chr4 (206-327)||(31699542-31699663)
chr4 (239-327)||(51475227-51475315)
chr4 (242-327)||(37306469-37306554)
[»] chr8 (4 HSPs)
chr8 (205-327)||(30085441-30085563)
chr8 (206-327)||(33440567-33440688)
chr8 (205-262)||(28700549-28700606)
chr8 (205-262)||(16895237-16895294)
[»] chr7 (3 HSPs)
chr7 (203-327)||(17878674-17878798)
chr7 (222-327)||(47821992-47822097)
chr7 (205-333)||(43930018-43930144)
[»] chr6 (2 HSPs)
chr6 (206-312)||(32439473-32439579)
chr6 (205-327)||(7447629-7447750)
[»] chr3 (8 HSPs)
chr3 (215-327)||(13639408-13639520)
chr3 (206-327)||(48543206-48543327)
chr3 (205-320)||(29235643-29235758)
chr3 (234-320)||(46893416-46893502)
chr3 (205-327)||(54186992-54187114)
chr3 (294-328)||(31497765-31497799)
chr3 (205-327)||(42780666-42780788)
chr3 (289-334)||(26223196-26223241)
[»] chr1 (7 HSPs)
chr1 (206-327)||(19078908-19079029)
chr1 (206-327)||(19126796-19126917)
chr1 (206-327)||(24886034-24886155)
chr1 (234-312)||(11709656-11709734)
chr1 (205-327)||(29068074-29068196)
chr1 (205-262)||(52444504-52444561)
chr1 (285-322)||(15275599-15275636)
[»] chr2 (4 HSPs)
chr2 (206-319)||(864171-864282)
chr2 (208-327)||(6951695-6951815)
chr2 (283-319)||(35452313-35452349)
chr2 (242-320)||(37285185-37285263)
[»] chr5 (4 HSPs)
chr5 (242-334)||(18237192-18237284)
chr5 (205-327)||(5990582-5990704)
chr5 (242-327)||(32153756-32153841)
chr5 (230-327)||(41020241-41020338)
[»] scaffold0922 (1 HSPs)
scaffold0922 (253-327)||(709-783)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 6011354 - 6011575
Alignment:
Q  15 aatatatcagtgagaggagacttggagattaatgattgctttagcaagtccaaaatctggaatgttaaaataggcataaacatattgttaaactaagaaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6011354 aatatatcagtgagaggagacttggagattaatgattgctttagcaagtccaaaatctggaatgttaaaataggcataaacataatgttaaactaagaaa 6011453  T
Q  115 tatttatattacattctaacgcttgtttcacatatctcccatacacaagtataaaaattaattaaggaacttaaaagaagtatatgcattagaggagtgc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6011454 tatttatattacattctaacgcttgtttcacatatctcccatacacaagtataaaaattaattaaggaacttaaaagaagtatatgcattagaggagtgc 6011553  T
Q  215 tatgaagactcactttctaaca 236  Q
    ||||||||||||||||||||||    
T  6011554 tatgaagactcactttctaaca 6011575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 327
Target Start/End: Complemental strand, 31699663 - 31699542
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    |||| |||||||| | |||| ||||||||||| ||||| |||||| |||||||||||  ||||||| || |||  | ||| ||||||||||| || | ||    
T  31699663 gaggggtgctatggacactctctttctaacactctctccaacactcactctcttattgggtgaaattcatgtgggtatcatacattggaaatggacccca 31699564  T
Q  306 cataaagtgatgagatccacat 327  Q
    |||||| || ||||| ||||||    
T  31699563 cataaaatggtgagacccacat 31699542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 51475315 - 51475227
Alignment:
Q  239 ctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacat 327  Q
    |||||||||||  |||||||||||  ||||||| || |||  |  |||||||||||||| |||| ||||||||||| ||||||||||||    
T  51475315 ctctctaacacccactctcttattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacat 51475227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 37306554 - 37306469
Alignment:
Q  242 tctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacat 327  Q
    ||||||||| ||| |||||||  ||||||| || |||  |  |||||||||||||| |||||||||||||||| ||||| ||||||    
T  37306554 tctaacactcactttcttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtgagacccacat 37306469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 30085563 - 30085441
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    |||||| || |||| | |||| ||||||||||| |||||||||||||||||||||||| |||||||| || |||| |||||||  |||||||| |||| |    
T  30085563 agaggaatgttatggacactctctttctaacactctctctaacacttactctcttattgagtgaaattcatgtgagtgtcacatgttggaaatggatccc 30085464  T
Q  305 acataaagtgatgagatccacat 327  Q
    |||||||||| ||||||||||||    
T  30085463 acataaagtggtgagatccacat 30085441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 327
Target Start/End: Complemental strand, 33440688 - 33440567
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    |||||||| |||| | |||| |||| |||||| |||||||||| | |||||||||||  ||||||  || |||  |  |||||||||||||| |||| ||    
T  33440688 gaggagtgttatggacactctctttataacactctctctaacattcactctcttattgggtgaaagtcatgtgggtaccacacattggaaatggatccca 33440589  T
Q  306 cataaagtgatgagatccacat 327  Q
    ||||||||| ||||| ||||||    
T  33440588 cataaagtggtgagacccacat 33440567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 28700549 - 28700606
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttatt 262  Q
    ||||||||| |||| | |||| ||||||||||| |||||||||||| |||||||||||    
T  28700549 agaggagtgttatgtacactctctttctaacactctctctaacactcactctcttatt 28700606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 16895237 - 16895294
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttatt 262  Q
    |||| ||||||||||| ||||  |||||||||  |||||||||||| |||||||||||    
T  16895237 agagaagtgctatgaacactctttttctaacattctctctaacactcactctcttatt 16895294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 203 - 327
Target Start/End: Original strand, 17878674 - 17878798
Alignment:
Q  203 ttagaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatc 302  Q
    ||||| |||||||||| | |||| ||||||||||| |||| ||||| |||||||||||||  ||||||  || |||  | ||||||||| ||||||||||    
T  17878674 ttagaagagtgctatggacactctctttctaacactctctttaacatttactctcttattgggtgaaagtcatgtgggtatcacacattagaaatagatc 17878773  T
Q  303 tcacataaagtgatgagatccacat 327  Q
     ||||||||||| ||||||| ||||    
T  17878774 ccacataaagtggtgagatcgacat 17878798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 327
Target Start/End: Original strand, 47821992 - 47822097
Alignment:
Q  222 actcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagat 321  Q
    |||| ||||||| ||| |||||||||||| |||||  ||||  ||||||| || |||  |  |||||||||||||| |||| ||||||||||| ||||||    
T  47821992 actctctttctagcactctctctaacactcactcttatattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagat 47822091  T
Q  322 ccacat 327  Q
    ||||||    
T  47822092 ccacat 47822097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 333
Target Start/End: Complemental strand, 43930144 - 43930018
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    ||||||||| |||| | |||| ||||||||||| |||||||||||| ||||| |||||  ||||||| || |||  |  ||||||||| |||| |||| |    
T  43930144 agaggagtgttatggacactctctttctaacactctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgaaaatggatcac 43930045  T
Q  305 acataaagtgatgagatccacataaattt 333  Q
    | |||||||| ||||| |||||| |||||    
T  43930044 a-ataaagtggtgaga-ccacattaattt 43930018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 206 - 312
Target Start/End: Original strand, 32439473 - 32439579
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    ||||||||||||||| |||| ||||| ||||| |||||||||||| |||||||||||  ||||||| || |||  |  |||||||||||||| |||| ||    
T  32439473 gaggagtgctatgaacactctctttcaaacactctctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattggaaatggatccca 32439572  T
Q  306 cataaag 312  Q
    |||||||    
T  32439573 cataaag 32439579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 7447750 - 7447629
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    |||||||||||||  | ||||  |||||||||| |||||||||| | |||||||| ||  ||||||| || |||  |  |||||||| ||||| |||| |    
T  7447750 agaggagtgctattgacactctatttctaacactctctctaaca-tcactctcttgttgggtgaaattcatgtgggtaccacacattagaaatggatccc 7447652  T
Q  305 acataaagtgatgagatccacat 327  Q
    |||||||||| ||||| ||||||    
T  7447651 acataaagtggtgagacccacat 7447629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 327
Target Start/End: Original strand, 13639408 - 13639520
Alignment:
Q  215 tatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtg 314  Q
    |||||| |||| ||||||||||| |||||||||| | ||||| |||||   |||||| || |||  | ||||||||||||||| ||||||||||||||||    
T  13639408 tatgaacactctctttctaacactctctctaacagtcactcttttattggatgaaattcatgtgggtatcacacattggaaatggatctcacataaagtg 13639507  T
Q  315 atgagatccacat 327  Q
     ||||| ||||||    
T  13639508 gtgagacccacat 13639520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 327
Target Start/End: Complemental strand, 48543327 - 48543206
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    ||||||||||||||| |||| ||||||||||| ||||| |||||| |||||||||||  ||||||| || |||  |  || ||||||||||| || | ||    
T  48543327 gaggagtgctatgaacactctctttctaacactctctccaacactcactctcttattgggtgaaattcatgtgggtagcatacattggaaatggacccca 48543228  T
Q  306 cataaagtgatgagatccacat 327  Q
    |||||| || ||||| ||||||    
T  48543227 cataaaatggtgagacccacat 48543206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 320
Target Start/End: Original strand, 29235643 - 29235758
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    ||||||||| |||| | |||| ||||||||||| |||||||||||| |||||||||||  ||||||| || | | ||  |||||||| ||||| ||||      
T  29235643 agaggagtgttatggacactctctttctaacactctctctaacactcactctcttattgggtgaaattcatgaggataccacacattagaaatggatcca 29235742  T
Q  305 acataaagtgatgaga 320  Q
    |||||||||| |||||    
T  29235743 acataaagtggtgaga 29235758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 320
Target Start/End: Complemental strand, 46893502 - 46893416
Alignment:
Q  234 acaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgaga 320  Q
    |||| |||||||||||| ||||||||||||| |||||| || |||  |  |||||||||||||| |||| ||||||||||| |||||    
T  46893502 acactctctctaacactcactctcttattaaatgaaattcatgtgggtaacacacattggaaatggatcccacataaagtggtgaga 46893416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 54187114 - 54186992
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    |||| ||||||||| | |||| ||||||||||| |||||||||||| |||||||||||  ||||| | || |||  |  |||||||| ||||| |||| |    
T  54187114 agagaagtgctatggacactctctttctaacactctctctaacactcactctcttattgggtgaagttcatgtgggtaccacacattagaaatggatccc 54187015  T
Q  305 acataaagtgatgagatccacat 327  Q
    ||||||| || |||||| |||||    
T  54187014 acataaaatggtgagattcacat 54186992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 31497765 - 31497799
Alignment:
Q  294 aaatagatctcacataaagtgatgagatccacata 328  Q
    ||||||||||||||||||||| |||||||||||||    
T  31497765 aaatagatctcacataaagtggtgagatccacata 31497799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 327
Target Start/End: Original strand, 42780666 - 42780788
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    |||||||||||||| | |||  ||||||||||| |||||||||||| | |||||||||   |||||| || ||   | |||||| | | |||| |||| |    
T  42780666 agaggagtgctatggacactatctttctaacactctctctaacactcattctcttattggatgaaatccatgtaggtctcacacttagaaaatggatccc 42780765  T
Q  305 acataaagtgatgagatccacat 327  Q
    |||||||||| ||||| ||||||    
T  42780766 acataaagtggtgagacccacat 42780788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 26223241 - 26223196
Alignment:
Q  289 attggaaatagatctcacataaagtgatgagatccacataaatttc 334  Q
    |||| |||| |||| |||||||||||||||||||||||| ||||||    
T  26223241 attgaaaatggatcccacataaagtgatgagatccacatgaatttc 26223196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 327
Target Start/End: Original strand, 19078908 - 19079029
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    ||||||||||||| | ||||  |||||||||| |||||||||||| |||||||||||  ||||||  || | |  |  |||||||||||||| |||| ||    
T  19078908 gaggagtgctatggacactctgtttctaacactctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatccca 19079007  T
Q  306 cataaagtgatgagatccacat 327  Q
    ||||||||| ||||| ||||||    
T  19079008 cataaagtggtgagacccacat 19079029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 327
Target Start/End: Original strand, 19126796 - 19126917
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    ||||||||||||| | ||||  |||||||||| |||||||||||| |||||||||||  ||||||  || | |  |  |||||||||||||| |||| ||    
T  19126796 gaggagtgctatggacactctgtttctaacactctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatccca 19126895  T
Q  306 cataaagtgatgagatccacat 327  Q
    ||||||||| ||||| ||||||    
T  19126896 cataaagtggtgagacccacat 19126917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 327
Target Start/End: Original strand, 24886034 - 24886155
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    ||||||||||||| | | || ||||||||||| |||||||||||| ||||| |||||  ||||||| || |||  |  ||||||||| ||||||||| ||    
T  24886034 gaggagtgctatggacattctctttctaacactctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgtaaatagatccca 24886133  T
Q  306 cataaagtgatgagatccacat 327  Q
    ||||||| | ||||| ||||||    
T  24886134 cataaagcggtgagacccacat 24886155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 11709734 - 11709656
Alignment:
Q  234 acaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaag 312  Q
    |||| |||||||||||| ||||||||||| |||||||| || |||  |  |||||||||||||| |||| |||||||||    
T  11709734 acactctctctaacactcactctcttattgagtgaaattcatgtgggtaccacacattggaaatggatcccacataaag 11709656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 327
Target Start/End: Original strand, 29068074 - 29068196
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    ||||||||| |||| | |||| |||||||||||  ||||||||||| ||| | |||||  |||||||||  |||  |  |||||||||||||| |||| |    
T  29068074 agaggagtgttatggacactctctttctaacactttctctaacactcactattttattgggtgaaatacgtgtgggtaccacacattggaaattgatccc 29068173  T
Q  305 acataaagtgatgagatccacat 327  Q
    ||||||| || ||||| ||||||    
T  29068174 acataaaatggtgagacccacat 29068196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 52444561 - 52444504
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttatt 262  Q
    |||||||||||||| | |||| |||||||||||||||||||||| |  ||||||||||    
T  52444561 agaggagtgctatggacactctctttctaacaccctctctaacattccctctcttatt 52444504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Original strand, 15275599 - 15275636
Alignment:
Q  285 acacattggaaatagatctcacataaagtgatgagatc 322  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  15275599 acacattgtaaatagatctcatataaagtgatgagatc 15275636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 319
Target Start/End: Complemental strand, 864282 - 864171
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    ||||||||||||||| |||| ||||| |||||  ||||||||||| |||||||||||  ||||||| || |||  |  |||||||| ||||| |||| ||    
T  864282 gaggagtgctatgaacactctctttcaaacac--tctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattagaaatggatccca 864185  T
Q  306 cataaagtgatgag 319  Q
    ||||||| ||||||    
T  864184 cataaagcgatgag 864171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 327
Target Start/End: Original strand, 6951695 - 6951815
Alignment:
Q  208 ggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaa-tacacgtgaatgtcacacattggaaatagatctcac 306  Q
    |||||| |||| | |||| ||||||||||| || | | ||||| ||||||||||| ||||||| | || |||  || ||||||||| |||| |||| |||    
T  6951695 ggagtgttatgtacactctctttctaacactctttgtgacactaactctcttattgagtgaaaattcatgtgggtgccacacattgaaaatggatcccac 6951794  T
Q  307 ataaagtgatgagatccacat 327  Q
    |||||||| ||||| ||||||    
T  6951795 ataaagtggtgagacccacat 6951815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 35452349 - 35452313
Alignment:
Q  283 tcacacattggaaatagatctcacataaagtgatgag 319  Q
    |||||||||||||||||||| ||||||||||||||||    
T  35452349 tcacacattggaaatagatcccacataaagtgatgag 35452313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 37285263 - 37285185
Alignment:
Q  242 tctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgaga 320  Q
    ||||||||| ||||| |||||  ||||||| || |||  |  |||||||||||||| |||||||| |||||||||||||    
T  37285263 tctaacactcactcttttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacgtaaagtgatgaga 37285185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 334
Target Start/End: Complemental strand, 18237284 - 18237192
Alignment:
Q  242 tctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacataaatttc 334  Q
    ||||||||| ||||| |||||  ||||||| || |||  | |||||||||| ||||||||| ||||||||||| ||||| |||||| ||||||    
T  18237284 tctaacactcactcttttattgggtgaaattcatgtgggtatcacacattgaaaatagatcccacataaagtggtgagacccacatgaatttc 18237192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 5990704 - 5990582
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    |||||||||||||| | |||| |||||||||||  |||| |||||| ||||| |||||  ||||||| || |||  |  || ||||||||||| |||| |    
T  5990704 agaggagtgctatggacactctctttctaacactttctccaacactcactcttttattgggtgaaattcatgtgggtaccatacattggaaatggatccc 5990605  T
Q  305 acataaagtgatgagatccacat 327  Q
    ||||||| || ||||| ||||||    
T  5990604 acataaaatggtgagacccacat 5990582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 32153841 - 32153756
Alignment:
Q  242 tctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacat 327  Q
    ||||||||| |||||||||||  ||||||  || ||| ||  ||||| |||||||| |||| ||||||||||| ||||| ||||||    
T  32153841 tctaacactcactctcttattgggtgaaacccatgtggatcccacactttggaaatggatcccacataaagtggtgagacccacat 32153756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 41020338 - 41020241
Alignment:
Q  230 tctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacat 327  Q
    |||||||| |||||||||||  |||||||||||  |||||||| | |||  |  |||| |||||||||  ||| ||||||||||| ||||| ||||||    
T  41020338 tctaacacactctctaacacccactctcttattgggtgaaatatatgtgggtaccacatattggaaatgaatcccacataaagtggtgagacccacat 41020241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 709 - 783
Alignment:
Q  253 ctctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacat 327  Q
    |||||||||| |||||||| || ||| ||  ||||||||| |||| |||| ||||||||||| ||||| ||||||    
T  709 ctctcttattgagtgaaattcatgtggataccacacattgaaaatggatcccacataaagtggtgagacccacat 783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University