View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_high_40 (Length: 350)
Name: NF16815_high_40
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 23 - 332
Target Start/End: Original strand, 26643110 - 26643420
Alignment:
| Q |
23 |
agcctgtatcattcataaaaat-aacaaaaataactaatcagcgaggcaaaaatacatgtttatctttaaatgtttcctacaactaaattgacaacatcn |
121 |
Q |
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| T |
26643110 |
agcctgtatcattcataaaaaagaacaaaaataactaatcagcgaggcaaaagtacatgtttatctttaaatgtttcctacaactaaattgacaacatca |
26643209 |
T |
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| Q |
122 |
nnnnnnggaacataaaaaatcacaagattgctcaccatagcagggtaagtgtcaccaacaatcttttgtattaacgattgaatttcgctatcaggattta |
221 |
Q |
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| T |
26643210 |
aaaaaaggaacataaaaaatcacaagattgctcaccatagcagggtaagtgtcaccaacaatcttttgtattaacgattgaatttcgctatcaggattta |
26643309 |
T |
|
| Q |
222 |
gaaaggtggaaaagtcctaaaaacacaattataacataaatatttttgcatgttatagaaattcaaaggtaatgcaatgaagaacaattcatggtaacat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26643310 |
gaaaggtggaaaagtcctaaaaacacaattataacataaatatttttgcatgttatagaaattcaaaggtaatgcaatgaagaacaattcatggtaacat |
26643409 |
T |
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| Q |
322 |
accacggcttg |
332 |
Q |
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| T |
26643410 |
accacggcttg |
26643420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 299
Target Start/End: Original strand, 26657856 - 26658131
Alignment:
| Q |
26 |
ctgtatcattcataaaa-ataacaaaaataactaatcagcgaggcaaaaatacatgtttatctttaaatgtttcctacaactaaattgacaacatcnnnn |
124 |
Q |
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| T |
26657856 |
ctgtatcattcataaaagagaacaaaaatcattaatcagtgagacataagtatatgttaatcttaatatgtttcctataactaaacctacaaaatcaaaa |
26657955 |
T |
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| Q |
125 |
nnnggaacataaaaaatcacaagattgctcaccat---agcagggtaagtgtcaccaacaatcttttgtattaacgattgaatttcgctatcaggattta |
221 |
Q |
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||||||||||||| |||||||||||||||| ||||||| | ||||| ||| ||||| ||||||| ||||| ||||||| || |||| |
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| T |
26657956 |
taaagaacataaaaaataacaagattgctcaccaccacagcagggcagttgtcatcaagaatctcttgtattcgcgatttgatttcgc---caaacttta |
26658052 |
T |
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| Q |
222 |
gaaaggtggaaaagtcctaaaaacacaattataaca-taaatatttttgcatgttatagaaattcaaaggtaatgcaat |
299 |
Q |
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|| || | ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
26658053 |
gatagttaaaaaagtcctaaaaacacaactataagtgtaaatatttttgcatgttatagaaattcacaggcaatgcaat |
26658131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 26671195 - 26671276
Alignment:
| Q |
251 |
tataacataaatatttttgcatgttatagaaattcaaaggtaatgcaatgaagaacaattcatggtaacataccacggcttg |
332 |
Q |
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||||| ||||||||||||||| |||| ||||||||| | |||||||||| |||||| | |||| ||||||||||| |||| |
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| T |
26671195 |
tataaaataaatatttttgcaagttaaagaaattcacaaacaatgcaatgaggaacaaataatggcaacataccacgccttg |
26671276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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