View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16815_high_42 (Length: 316)

Name: NF16815_high_42
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16815_high_42
NF16815_high_42
[»] chr4 (7 HSPs)
chr4 (24-303)||(43708002-43708278)
chr4 (190-250)||(3778474-3778534)
chr4 (190-253)||(3792121-3792184)
chr4 (190-250)||(9228323-9228383)
chr4 (125-184)||(4569447-4569506)
chr4 (190-253)||(16627980-16628043)
chr4 (190-253)||(18856612-18856675)
[»] chr8 (11 HSPs)
chr8 (190-255)||(19751522-19751587)
chr8 (190-247)||(26402319-26402376)
chr8 (190-253)||(10688252-10688315)
chr8 (190-253)||(26297419-26297482)
chr8 (190-253)||(26310676-26310739)
chr8 (190-253)||(33036921-33036984)
chr8 (190-253)||(34587011-34587074)
chr8 (190-253)||(35741425-35741488)
chr8 (190-252)||(18869659-18869721)
chr8 (218-276)||(9024620-9024678)
chr8 (131-184)||(590181-590234)
[»] chr7 (10 HSPs)
chr7 (190-253)||(21984169-21984232)
chr7 (192-253)||(9189134-9189195)
chr7 (190-253)||(12397795-12397858)
chr7 (190-253)||(16880963-16881026)
chr7 (190-253)||(18409702-18409765)
chr7 (190-253)||(21640726-21640789)
chr7 (190-253)||(24265311-24265374)
chr7 (131-184)||(3320812-3320865)
chr7 (131-184)||(30246357-30246410)
chr7 (190-238)||(24275881-24275929)
[»] chr5 (10 HSPs)
chr5 (190-253)||(19589337-19589400)
chr5 (190-253)||(28806710-28806773)
chr5 (190-253)||(33769075-33769138)
chr5 (190-253)||(37560581-37560644)
chr5 (190-253)||(43593157-43593220)
chr5 (190-253)||(43625951-43626014)
chr5 (138-253)||(27445805-27445922)
chr5 (190-253)||(28833095-28833158)
chr5 (131-184)||(25451861-25451914)
chr5 (131-184)||(40222130-40222183)
[»] chr1 (3 HSPs)
chr1 (190-253)||(13599279-13599342)
chr1 (190-253)||(41391488-41391551)
chr1 (131-184)||(9525832-9525885)
[»] chr2 (4 HSPs)
chr2 (190-252)||(31056994-31057056)
chr2 (190-252)||(39483802-39483864)
chr2 (192-253)||(19345315-19345376)
chr2 (131-184)||(22713258-22713311)
[»] scaffold0197 (2 HSPs)
scaffold0197 (190-253)||(13418-13481)
scaffold0197 (190-253)||(18297-18360)
[»] chr6 (2 HSPs)
chr6 (190-253)||(33335064-33335127)
chr6 (190-253)||(14741559-14741622)
[»] chr3 (10 HSPs)
chr3 (190-253)||(3327476-3327539)
chr3 (190-253)||(6793854-6793917)
chr3 (190-253)||(8513130-8513193)
chr3 (190-253)||(22172296-22172359)
chr3 (190-253)||(32476376-32476439)
chr3 (190-253)||(1306907-1306970)
chr3 (131-184)||(10094830-10094883)
chr3 (131-184)||(10201716-10201769)
chr3 (131-184)||(47878913-47878966)
chr3 (131-184)||(54192612-54192665)
[»] scaffold0006 (2 HSPs)
scaffold0006 (190-252)||(6564-6626)
scaffold0006 (190-252)||(7076-7138)
[»] scaffold0259 (1 HSPs)
scaffold0259 (190-253)||(1373-1436)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 24 - 303
Target Start/End: Complemental strand, 43708278 - 43708002
Alignment:
Q  24 gatctaggtaatgaattggttaacacattcgactgattgtcttatgatgcaacnnnnnnnataacaattttcttagattctatcttttctgtagtgaaat 123  Q
    |||| ||||||||||||||||||||||||||||| |||||||| |||||||||       ||||||||| |   |||||||||||||||| |||||||||    
T  43708278 gatccaggtaatgaattggttaacacattcgacttattgtcttctgatgcaactttttttataacaattct---agattctatcttttctctagtgaaat 43708182  T
Q  124 tcaaattaatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaattgcaaaatgtatcttcacacatccttaagtaacttctaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43708181 tcaaattaatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaattgcaaaatgtatcttcacacattcttaagtaacttctaa 43708082  T
Q  224 ctccccaatcatacccttcaaccatatggctttctttgtcccttcaaaaaggaaaatcccaacttgagttgtacataatg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43708081 ctccccaatcatacccttcaaccatatggctttctttgtcccttcaaataggaaaatcccaacttgagttgtacataatg 43708002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 3778474 - 3778534
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatat 250  Q
    ||||||||||||||||| ||| ||||| | ||||||| ||||||||||| |||||||||||    
T  3778474 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatacctttcaaccatat 3778534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 3792184 - 3792121
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| ||||||||| | ||||||||||||||    
T  3792184 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatatctttcaaccatatggc 3792121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 9228383 - 9228323
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatat 250  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || |||||||||||    
T  9228383 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatat 9228323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 4569506 - 4569447
Alignment:
Q  125 caaattaatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 184  Q
    ||||| ||||| ||||||||||||  |||||||||| |  ||||||||||||||||||||    
T  4569506 caaatgaatgtcaatgtgttttgttctttcatgatatacctgatgatttgtcaaatgaat 4569447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 16628043 - 16627980
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    |||||||||||| |||| ||| ||||| | ||||||| ||||||||||| ||||| ||||||||    
T  16628043 aatgtatcttcatacattcttgagtaattcctaactcaccaatcatacctttcaaacatatggc 16627980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 18856612 - 18856675
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || || |||||||||||    
T  18856612 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatcccttttaaccatatggc 18856675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 19751587 - 19751522
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggctt 255  Q
    ||||||||||||||||| ||| ||||| | ||||||| ||||||||||| ||||||||||||||||    
T  19751587 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatacctttcaaccatatggctt 19751522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 26402376 - 26402319
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaacca 247  Q
    ||||||||||||||||| ||| ||||| | ||||||| ||||||||||||||||||||    
T  26402376 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatacccttcaacca 26402319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 10688315 - 10688252
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  10688315 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 10688252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 26297419 - 26297482
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  26297419 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 26297482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 26310676 - 26310739
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  26310676 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 26310739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 33036984 - 33036921
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  33036984 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 33036921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 34587011 - 34587074
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    |||||||||||||| || ||| ||||| | ||||||| ||||||||||| ||||||||||||||    
T  34587011 aatgtatcttcacatattcttgagtaattcctaactcaccaatcatacctttcaaccatatggc 34587074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 35741425 - 35741488
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  35741425 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 35741488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 18869721 - 18869659
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatgg 252  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || |||||||||||||    
T  18869721 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatgg 18869659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 9024678 - 9024620
Alignment:
Q  218 ttctaactccccaatcatacccttcaaccatatggctttctttg-tcccttcaaaaagga 276  Q
    |||||||||||||||||| || |||||||||||||| ||||||| ||||||||| |||||    
T  9024678 ttctaactccccaatcatccctttcaaccatatggc-ttctttgatcccttcaacaagga 9024620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 590234 - 590181
Alignment:
Q  131 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 184  Q
    ||||| ||||||||||||| |||||||||| |  |||||||||| |||||||||    
T  590234 aatgtcaatgtgttttgtcctttcatgatatacctgatgatttgccaaatgaat 590181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 21984169 - 21984232
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| ||||||||||| ||||||||||||||    
T  21984169 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatacctttcaaccatatggc 21984232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 9189195 - 9189134
Alignment:
Q  192 tgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||| ||| ||||| | ||||||| ||||||||||| ||||||||||||||    
T  9189195 tgtatcttcacacattcttgagtaattcctaactcaccaatcatacctttcaaccatatggc 9189134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 12397795 - 12397858
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  12397795 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 12397858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 16880963 - 16881026
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  16880963 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 16881026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 18409702 - 18409765
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  18409702 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 18409765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 21640726 - 21640789
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  21640726 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 21640789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 24265374 - 24265311
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  24265374 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 24265311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 3320812 - 3320865
Alignment:
Q  131 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 184  Q
    ||||| |||||| |||||| |||||||||| | ||||||||||| |||||||||    
T  3320812 aatgtcaatgtgctttgtcctttcatgatacacttgatgatttggcaaatgaat 3320865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 30246410 - 30246357
Alignment:
Q  131 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 184  Q
    ||||||||||||||||||  |||||||||| |  |||||||||| |||||||||    
T  30246410 aatgttaatgtgttttgttctttcatgatatacctgatgatttgccaaatgaat 30246357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 24275929 - 24275881
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacc 238  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||||||    
T  24275929 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatacc 24275881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 19589337 - 19589400
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| ||||||||||| ||||||||||||||    
T  19589337 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatacctttcaaccatatggc 19589400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 28806773 - 28806710
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  28806773 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 28806710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 33769075 - 33769138
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  33769075 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 33769138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 37560644 - 37560581
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  37560644 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 37560581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 43593157 - 43593220
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  43593157 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 43593220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 43625951 - 43626014
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  43625951 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 43626014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 27445805 - 27445922
Alignment:
Q  138 atgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaattgcaaaatg--tatcttcacacatccttaagtaacttctaactccccaatcat 235  Q
    ||||| |||||| |||||||||| | ||||||| ||| ||| ||||| |||   ||  ||||||||||||| ||| ||||| | ||||||| ||||||||    
T  27445805 atgtgctttgtcctttcatgatacacttgatgaattgccaagtgaatggcactttgactatcttcacacattcttgagtaattcctaactcaccaatcat 27445904  T
Q  236 acccttcaaccatatggc 253  Q
     || ||||||||||||||    
T  27445905 ccctttcaaccatatggc 27445922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 28833095 - 28833158
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || |||||||| |||||    
T  28833095 aatgtatcttcacacattcttgagtaattcctaactcaccaatcattcctttcaaccacatggc 28833158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 25451914 - 25451861
Alignment:
Q  131 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 184  Q
    ||||| ||||||||||||| |||||||||| |  |||||||||| |||||||||    
T  25451914 aatgtcaatgtgttttgtcctttcatgatatacctgatgatttgccaaatgaat 25451861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 40222183 - 40222130
Alignment:
Q  131 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 184  Q
    ||||| ||||||||||||  |||||||||| |  ||||||||||||||||||||    
T  40222183 aatgtcaatgtgttttgttctttcatgatatacctgatgatttgtcaaatgaat 40222130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 13599279 - 13599342
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| ||||||||||| ||||||||||||||    
T  13599279 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatacctttcaaccatatggc 13599342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 41391488 - 41391551
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  41391488 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 41391551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 9525885 - 9525832
Alignment:
Q  131 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 184  Q
    ||||| |||||| |||||| |||||||||| | ||||||||||| |||||||||    
T  9525885 aatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaaatgaat 9525832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 31056994 - 31057056
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatgg 252  Q
    |||||||||||| |||| ||| ||||| | ||||||| |||||||||||||||||||||||||    
T  31056994 aatgtatcttcatacattcttgagtaattcctaactcaccaatcatacccttcaaccatatgg 31057056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 39483802 - 39483864
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatgg 252  Q
    ||||||||||||||||| ||| ||||| | ||||||| ||||||||||| |||||||||||||    
T  39483802 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatacctttcaaccatatgg 39483864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 19345315 - 19345376
Alignment:
Q  192 tgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  19345315 tgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 19345376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 22713258 - 22713311
Alignment:
Q  131 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 184  Q
    ||||| ||||||||||||| |||||||||| |  |||||||||| |||||||||    
T  22713258 aatgtcaatgtgttttgtcctttcatgatatacctgatgatttgccaaatgaat 22713311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 13481 - 13418
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  13481 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 13418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 18360 - 18297
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  18360 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 18297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 33335127 - 33335064
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  33335127 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 33335064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 14741622 - 14741559
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    |||||||| |||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  14741622 aatgtatcctcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 14741559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 3327539 - 3327476
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  3327539 aatgtatcttcacacattcttgagtaattcctaactcaccaatcattcctttcaaccatatggc 3327476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 6793917 - 6793854
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||||||||| | ||||||| |||||||| || |||||| |||||||    
T  6793917 aatgtatcttcacacattcttaagtaattcctaactcaccaatcatccctttcaacaatatggc 6793854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 8513130 - 8513193
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  8513130 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 8513193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 22172359 - 22172296
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  22172359 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 22172296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 32476376 - 32476439
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  32476376 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 32476439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 1306907 - 1306970
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    ||||||||||||||||| ||| ||||| | ||||||| ||||||||  | ||||||||||||||    
T  1306907 aatgtatcttcacacattcttgagtaattcctaactcaccaatcatctctttcaaccatatggc 1306970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 10094830 - 10094883
Alignment:
Q  131 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 184  Q
    ||||| |||||| |||||| |||||||||| |  ||||||||||||||||||||    
T  10094830 aatgtcaatgtgctttgtcctttcatgatacacctgatgatttgtcaaatgaat 10094883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 10201716 - 10201769
Alignment:
Q  131 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 184  Q
    ||||| |||||| |||||| |||||||||| |  ||||||||||||||||||||    
T  10201716 aatgtcaatgtgctttgtcctttcatgatacacctgatgatttgtcaaatgaat 10201769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 47878913 - 47878966
Alignment:
Q  131 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 184  Q
    ||||| ||||||||||||| |||||||||| |  |||||||||| |||||||||    
T  47878913 aatgtcaatgtgttttgtcctttcatgatatacctgatgatttgccaaatgaat 47878966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 54192665 - 54192612
Alignment:
Q  131 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 184  Q
    ||||| ||||||||||||| |||||||||| |  |||||||||| |||||||||    
T  54192665 aatgtcaatgtgttttgtcctttcatgatatacctgatgatttgccaaatgaat 54192612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 6564 - 6626
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatgg 252  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || |||||||||||||    
T  6564 aatgtatcttcacacattcttgagtaattcctaactcaccaatcattcctttcaaccatatgg 6626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 7076 - 7138
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatgg 252  Q
    ||||||||||||||||| ||| ||||| | ||||||| |||||||| || |||||||||||||    
T  7076 aatgtatcttcacacattcttgagtaattcctaactcaccaatcattcctttcaaccatatgg 7138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 1436 - 1373
Alignment:
Q  190 aatgtatcttcacacatccttaagtaacttctaactccccaatcatacccttcaaccatatggc 253  Q
    |||||||| |||||||| ||| ||||| | ||||||| |||||||| || ||||||||||||||    
T  1436 aatgtatcctcacacattcttgagtaattcctaactcaccaatcatccctttcaaccatatggc 1373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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