View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16815_high_43 (Length: 312)

Name: NF16815_high_43
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16815_high_43
NF16815_high_43
[»] chr1 (1 HSPs)
chr1 (1-296)||(47128101-47128396)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 47128101 - 47128396
Alignment:
Q  1 atctctattagtacctcatctattgtaagcccatctaaactattttctatgtgctttgcttggatgtaactgttttggtctccataaacacttgggtcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47128101 atctctattagtacctcatctattgtaagcccatctaaactattttctatgtgctttgcttggatggaactgttttggtctccataaacacttgggtcca 47128200  T
Q  101 gcttgctggcaggaggaaattcctatatgtacaagaaacattgaaacatattannnnnnnataacaaggataagttttttaattaaaattgtaaactctg 200  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  47128201 gcttgctggcaggaggaaattcctacatgtacaagaaacattgaaacatattatttttttataacaaggataagttttttaattaaaattgtaaactctg 47128300  T
Q  201 aactaaaatataagcagaaaatgtagatgtgcttggtcgaaattcagacaagtacatataaacttttttacgtatatttaagtccagagggagtat 296  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47128301 aactaaaatataagcagaaaatgtagatgtacttggtcgaaattcggacaagtacatataaacttttttacgtatatttaagtccagagggagtat 47128396  T

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