View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16815_high_5 (Length: 729)
Name: NF16815_high_5
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 529
Target Start/End: Complemental strand, 11822483 - 11821973
Alignment:
| Q |
19 |
tataggacaccatcaagagcagcatagtttgaatgtgtgagagggcaccctgcatgagcacacctaaagcatgtcttgtggtagatttctccttccaatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11822483 |
tataggacaccatcaagagcagcatagtttgaatgtgtgagagggcaccctgcatgagcacacctaaagcatgtcttgtggtagatttctccttccaatg |
11822384 |
T |
|
| Q |
119 |
tcacctgtttaataaaaccnnnnnnntgtgttacaacttttggtcacggattttggcctaatgcgtctgtattacaacttgtgtttaaatactatgttta |
218 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
11822383 |
tcacctgtttaataaaaccaaaaaaatgtattacaacttttggtcacgggttttggcctaatgcgcctgtattacaacttgtgtttaaatactacgttta |
11822284 |
T |
|
| Q |
219 |
tcgataaactatgaacgatatccaataaaatgtacgattgctttttaaaatcaaattcttggtccaagtaatatgaaattagttaacaaccaaattttta |
318 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11822283 |
tcgataaactatgaaccatatccaacaaaatgtacgattgctttttaaaatcaaattcttggtccaagtaatatgaaattagttaacaaccaaattttta |
11822184 |
T |
|
| Q |
319 |
taagaaacaattttccgcaaaatcaaggatcacatcaaaaacaacaattttcctcaaaatcaagaatcgcgacaaaccttttccagcggatagacagttt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11822183 |
taagaaacaattttccgcaaaatcaaggatcataacaaaaacaacaattttcctcaaaatcaagaatcgcgacaaaccttttccagcggatagacagttt |
11822084 |
T |
|
| Q |
419 |
tagagcaagtcgcacatttgtccagggtaccactgaacatggaagatagtctacttggtgtcctattctgtaaaagatcaatacatttgacatattagaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11822083 |
tagagcaagtcgcacatttgtccagggtaccactgaacatggaagatagtctacttggtgtcctattctgtaaaagatcaatacatttgacatattagaa |
11821984 |
T |
|
| Q |
519 |
ggagcactaaa |
529 |
Q |
| |
|
||||||||||| |
|
|
| T |
11821983 |
ggagcactaaa |
11821973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 612 - 714
Target Start/End: Complemental strand, 11821890 - 11821788
Alignment:
| Q |
612 |
ttgatgcttatcaaaataataataatttgatgaaattcatctctaatattttatggcgatattagagacgaatttcatatctttttggtccctaattttc |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11821890 |
ttgatgcttatcaaaataataataatttgatgaaattcatctctaatattttatggcgatattagagacgaatttcatatctttttggtccctaattttc |
11821791 |
T |
|
| Q |
712 |
atc |
714 |
Q |
| |
|
||| |
|
|
| T |
11821790 |
atc |
11821788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 390 - 492
Target Start/End: Original strand, 28938173 - 28938275
Alignment:
| Q |
390 |
acaaaccttttccagcggatagacagttttagagcaagtcgcacatttgtccagggtaccactgaacatggaagatagtctacttggtgtcctattctgt |
489 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | |||| ||||||||||| || || ||||||||||| || || ||||| || |||||||| |||||| |
|
|
| T |
28938173 |
acaaaccttttccaaaggataaacagtttttgtgcaaactgcacatttgtctagagttccactgaacatagaggagagtctgctgggtgtcctgttctgt |
28938272 |
T |
|
| Q |
490 |
aaa |
492 |
Q |
| |
|
||| |
|
|
| T |
28938273 |
aaa |
28938275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 28937963 - 28938059
Alignment:
| Q |
22 |
aggacaccatcaagagcagcatagtttgaatgtgtgagagggcaccctgcatgagcacacctaaagcatgtcttgtggtagatttctccttccaatg |
118 |
Q |
| |
|
||||||||||| || ||||||||| |||||||| || |||| ||| ||||||||||||||||||| |||||||||| ||| |||||||||| |
|
|
| T |
28937963 |
aggacaccatctagtgcagcataggaagaatgtgtaaggtggcaacctccatgagcacacctaaagcaattcttgtggtaacattccccttccaatg |
28938059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University