View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_high_51 (Length: 282)
Name: NF16815_high_51
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_51 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 648490 - 648742
Alignment:
| Q |
13 |
aatatggatataaaggagagatttatattgattgtactgcttaaagatagtaatagacgatgcaatctaaacatgaaaacatgaacattttctcaaaacc |
112 |
Q |
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| T |
648490 |
aatatggatataaaggagagatttatattgattgtactgcttaaagatagtaatagacgatgcaatctaaacatgaaaacatgaacattttctcaaaacc |
648589 |
T |
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| Q |
113 |
aacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacacccagtatttaaacattgctagcttttgctctgaataaatg |
212 |
Q |
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| T |
648590 |
aacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacacccagtatttaaacattgctagcttttgttctgaataaatg |
648689 |
T |
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| Q |
213 |
aagatttgtcttaaacacaccagacttttaaattttaaaatattaaatcacac |
265 |
Q |
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| T |
648690 |
aagatttgtcttaaacacaccagacttttaaattttaaaatattaaatcacac |
648742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 76 - 258
Target Start/End: Original strand, 685955 - 686133
Alignment:
| Q |
76 |
aatctaaacatgaaaacatgaacattttctcaaaaccaacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacaccca |
175 |
Q |
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|||| |||||| ||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||| |
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| T |
685955 |
aatccaaacataaaaacatgaacattttctcaa--ccaaaaacaagtcctaaaatttcagttatgctaaaacataatagaacttttataaattacaccca |
686052 |
T |
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| Q |
176 |
gtatttaaacattgctagcttttgctctgaataaatgaagatttgtcttaaacacaccagacttttaaattttaaaatattaa |
258 |
Q |
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| T |
686053 |
gttttcaaacattgctagctttttttcttaataaatgaatatttgt-ttgaacaga-tagacttttaaattttaaaatattaa |
686133 |
T |
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