View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_high_63 (Length: 264)
Name: NF16815_high_63
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_63 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 2678958 - 2679224
Alignment:
| Q |
1 |
aactaatatttcaatagagagtgagaaattttggagagatgacacgtcatcataatgttagtctaaaaataactaagtataaaagagtggagaatttttc |
100 |
Q |
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| T |
2678958 |
aactaataatttaatagagagtgagaaattttggagagatgacacatcatcattatgttagtctagaaacaactaagtataaa-gagtggagagtttttc |
2679056 |
T |
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| Q |
101 |
tatatgacatatcatcacaatgcttcctgaaaataacttaaatttactctatag----atagataacgttgagtttaactgttctacttatcgttgtcct |
196 |
Q |
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| T |
2679057 |
tatatgacacatcatcacaatgtttcctgaaaataacttaaatttactctatagatagatagataacgttgagtttaactgttctacttatcgttgttct |
2679156 |
T |
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| Q |
197 |
tcaaccaaaataaggcaattttcagaagagataatgaccatagctgagctaataaatttagttcagat |
264 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
2679157 |
tcaaccaaaataaggcaattttcagaagagataatggccataactgagataataaatttagttcagat |
2679224 |
T |
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