View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_high_70 (Length: 243)
Name: NF16815_high_70
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_70 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 1692355 - 1692122
Alignment:
| Q |
11 |
cacagatcacaatctattttgatgttcacatatataaggaagggccgtaaacaaaagttgaatattagatctgtataagtagaagtcttattcaatttta |
110 |
Q |
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| T |
1692355 |
cacagatcacaatctattttggtgttcacatatataaggaaaggctgtaaacaaaagttgaatattaaatttgtataagtagaagtcttattcaatttta |
1692256 |
T |
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| Q |
111 |
tgtatacgtgtttatctataaattttcggacattgtttcttgaatctcaatctcc-atctccattatttacaaatcacaatcctcataattgatattcat |
209 |
Q |
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| T |
1692255 |
tgtatacgtgtttatctataaatcttcggacattgtttcttgaatctcaatctccaatctccattatttacaaatcacaatcctcataattgatattcat |
1692156 |
T |
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| Q |
210 |
ctcatccaataatatcttcaatttatactctctc |
243 |
Q |
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| T |
1692155 |
ctcaaccaataatatcttcaatttatactctctc |
1692122 |
T |
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