View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_high_71 (Length: 242)
Name: NF16815_high_71
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_71 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 697802 - 697963
Alignment:
| Q |
78 |
tgtcacactagtcacgaccctctatattatactaattccaaaatatatatggatatgattttatccaaaataaacattgcttcaacaaagattaaatgca |
177 |
Q |
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| T |
697802 |
tgtcacactagtcacgaccctctatattatactaatttcaaaatatatattgttatgattttatccaaaataaacattgcttcaacaaagattaaatgca |
697901 |
T |
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| Q |
178 |
ctatttttattatctattgaaaagaaaaacaaaatcaattgcaatagtttaaaaagtaattttgc |
242 |
Q |
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| T |
697902 |
ctatttttattatctattgaa---aaaaacaaaatcaattgcaatagtttaaaaagtaattttgc |
697963 |
T |
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