View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_high_77 (Length: 230)
Name: NF16815_high_77
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_77 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 92918 - 92721
Alignment:
| Q |
14 |
atcactcaaggtctttaaaaccgcggtaataacacaaaggtatcaaagttttatgaaacaatgaaataaaggtagcacatggaatacctcaagaaagagt |
113 |
Q |
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| T |
92918 |
atcactcaaggtctttaaaaccgcggtaataacacaaaggtatcaaagttttatgaaacaatggaataaaggtcgcgcatggaataactcaagaaagagt |
92819 |
T |
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| Q |
114 |
gatggtcgaacatgaatttacaatcacacaataacacacttacaagggaggcaacaactcgtaaccttaggacataaatcgcatctgataacttattt |
211 |
Q |
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| T |
92818 |
gatgggcgaacatgaatttacaatcacacgataacacactcataagggaggcagcaactcgtaaccttaggagagaaatcgcatctgatcacgtattt |
92721 |
T |
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Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 24014030 - 24013864
Alignment:
| Q |
49 |
aaaggtatcaaagttttatgaaacaatgaaataaaggtagcacatggaatacctcaagaaagagtgatggtcgaacatgaatttacaatcacacaataac |
148 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |
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| T |
24014030 |
aaaggtatcaaagttttatgaaacaatggaataaaggtagcacatggaatacctcaagaaagagtgatgggcgaatatgaatttacaatcacacgataac |
24013931 |
T |
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| Q |
149 |
acac--ttacaagggaggcaacaactcgtaaccttaggacataaatcgcatctgataacttattttt |
213 |
Q |
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| T |
24013930 |
acacattcacaagggaggcaacaactcgtaaccctagggcagaaatcgcatctgatcacttattttt |
24013864 |
T |
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