View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16815_high_8 (Length: 568)
Name: NF16815_high_8
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_high_8 |
 | |
|
| [»] scaffold0891 (2 HSPs) |
| | |
|
| [»] scaffold2086 (1 HSPs) |
| | |
|
| [»] scaffold1996 (2 HSPs) |
| | |
|
| [»] scaffold1335 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0891 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 3871 - 3321
Alignment:
| Q |
1 |
actatttgagttcaactgtttggttaaagtagacaggtaatagaatataagtattacaactaaaccaaaatataattcatattagactaatatttggaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3871 |
actatttgagttcaactgtttggtcaaagtagataggtaatagaatataagtattacaactaaaccaaaatataattcatattagactaatatttggaac |
3772 |
T |
|
| Q |
101 |
tcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttcttcttccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3771 |
tcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttcttcttccat |
3672 |
T |
|
| Q |
201 |
tccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttcgattacaatttcagttatatcatcccttttaacatcatggttaatttcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3671 |
tccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttccattacaatttcagttatatcatcccttttaacatcatggttaatttcca |
3572 |
T |
|
| Q |
301 |
tccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaatagtttcaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3571 |
tccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaatagtttcaag |
3472 |
T |
|
| Q |
401 |
tgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagcaagcacttcgtcttgggagcaccaactagttatgtatcctttatcctta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3471 |
tgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagcaagcacttcgtcttgggagcaccaactagttatgtatcctttatcctta |
3372 |
T |
|
| Q |
501 |
acttcatctagaaactcttgtggcaaagttgaagtctcttcacccattgct |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3371 |
acttcatctagaaactcttgtggcaaagttgaagtctcttcacccattgct |
3321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 4075 - 4011
Alignment:
| Q |
185 |
agctttcttcttccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttc |
250 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||||| | ||||||||| || ||||||||| |
|
|
| T |
4075 |
agctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttc |
4011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 91 - 551
Target Start/End: Original strand, 35774310 - 35774770
Alignment:
| Q |
91 |
tatttggaactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagcttt |
190 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| ||| | || ||||| || |||||||||||||| |||| ||||||| ||||| | | |||||| |
|
|
| T |
35774310 |
tatttgggactcaaatagctttatgatgaagaacctctttgattaacttctggaaattattgtatgatgatccacccaaattagtagcttttctagcttt |
35774409 |
T |
|
| Q |
191 |
cttcttccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttcgattacaatttcagttatatcatcccttttaacatcatgg |
290 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| | |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
35774410 |
cttcttccactccaagcacttgtgtctcatttcttttcccttttctccttccatcatttgcacaacaagttctgttatatcatcccttttaacatcatgg |
35774509 |
T |
|
| Q |
291 |
ttaatttccatccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaa |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35774510 |
ttaatttccatccctattttccaagacttgcataaataccaacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcacaccataggaaa |
35774609 |
T |
|
| Q |
391 |
tagtttcaagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagcaagcacttcgtcttgggagcaccaactagttatgtatcc |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
35774610 |
tagtttcaagtgtagaattccaaccacaatgagttaagaatcccccaattgatggatgagaaagcacttgatcttgatagcaccaactagttatgtatcc |
35774709 |
T |
|
| Q |
491 |
tttatccttaacttcatctagaaactcttgtggcaaagttgaagtctcttcacccattgct |
551 |
Q |
| |
|
| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35774710 |
tctatccttaacctcatctagaaaatcttgtggcaaagttgaagtctcttcacccattgct |
35774770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 97 - 548
Target Start/End: Original strand, 35848097 - 35848548
Alignment:
| Q |
97 |
gaactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttcttctt |
196 |
Q |
| |
|
|||||||||| || || ||||||||||| ||| | || |||||||| |||||||||||||| |||||||||||| ||||| | || |||||||||||| |
|
|
| T |
35848097 |
gaactcaaatggccttgtgatgaagaacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttctt |
35848196 |
T |
|
| Q |
197 |
ccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttcgattacaatttcagttatatcatcccttttaacatcatggttaatt |
296 |
Q |
| |
|
||| |||| | ||| ||||||||||||||||| ||||||| || ||||||||| || |||| |||| |||| || || ||||| ||||||| ||||||| |
|
|
| T |
35848197 |
ccacaccaaactcttttgtctcatttcttttcctttttctccttccatcatttccatcacaagttcaattatctcttcacttttcacatcatagttaatt |
35848296 |
T |
|
| Q |
297 |
tccatccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaatagttt |
396 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35848297 |
tccatcccaattttccaagtgttgcataaatacctacaatttgtttgttgctcaacaaagaaaggccaacaaatagtaggcacaccataggaaatagttt |
35848396 |
T |
|
| Q |
397 |
caagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagcaagcacttcgtcttgggagcaccaactagttatgtatcctttatc |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
35848397 |
caagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagaaagcacttgatcttgatagcaccaactagttatgtatcctctatc |
35848496 |
T |
|
| Q |
497 |
cttaacttcatctagaaactcttgtggcaaagttgaagtctcttcacccatt |
548 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
35848497 |
cttaacttcatctagaaactcttgaggcaaagatgaagtctcttcacccatt |
35848548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 98 - 548
Target Start/End: Original strand, 35865769 - 35866219
Alignment:
| Q |
98 |
aactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttcttcttc |
197 |
Q |
| |
|
||||||||||||||| |||||||||| ||| |||| || |||| |||||| ||||||| |||||||||||| ||||| | || ||||||||||||| |
|
|
| T |
35865769 |
aactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattaatgtatgatgatcctcccaaattagtagcatctgtagctttcttcttc |
35865868 |
T |
|
| Q |
198 |
cattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttcgattacaatttcagttatatcatcccttttaacatcatggttaattt |
297 |
Q |
| |
|
|| |||| | ||| ||||||||||||||||| ||||||| || ||||||||| || |||| ||| |||| || || ||||| ||||||| |||||||| |
|
|
| T |
35865869 |
cacaccaaactcttttgtctcatttcttttcctttttctccttccatcatttccatcacaagttctcttatctcttctcttttcacatcatagttaattt |
35865968 |
T |
|
| Q |
298 |
ccatccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaatagtttc |
397 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35865969 |
ccatccctattttccaagtgttgcataaatacctacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcacaccataggaaatagtttc |
35866068 |
T |
|
| Q |
398 |
aagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagcaagcacttcgtcttgggagcaccaactagttatgtatcctttatcc |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
35866069 |
aagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagaaagcacttgatcttgatagcaccaactagttatgtatcctctatcc |
35866168 |
T |
|
| Q |
498 |
ttaacttcatctagaaactcttgtggcaaagttgaagtctcttcacccatt |
548 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
35866169 |
ttaacttcatctagaaactcttgaggcaaagatgaagtctcttcacccatt |
35866219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 99 - 548
Target Start/End: Original strand, 35754195 - 35754644
Alignment:
| Q |
99 |
actcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttcttcttcc |
198 |
Q |
| |
|
||||||| |||||| ||| ||||||| ||| |||| |||||||| |||||| ||||||| ||||||| |||||| ||| | | |||||||||||||| |
|
|
| T |
35754195 |
actcaaaaagcattgtgacgaagaacctctgtaattaacttatggaaattagtgtatgatgatcctccaaaatcattagcctttttagctttcttcttcc |
35754294 |
T |
|
| Q |
199 |
attccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttcgattacaatttcagttatatcatcccttttaacatcatggttaatttc |
298 |
Q |
| |
|
| || | || ||| ||| |||||| |||||||||||||| |||||||||||| | ||||| ||| ||||| || |||||||| ||||||| ||||||||| |
|
|
| T |
35754295 |
actctatgctcttttgtttcatttgttttcccttttctcctttcatcatttccagtacaagttctgttatctcttccctttttacatcattgttaatttc |
35754394 |
T |
|
| Q |
299 |
catccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaatagtttca |
398 |
Q |
| |
|
||| |||| |||||||| | |||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
35754395 |
cattcctactttccaagtgtcgcataaatacttgcaatttgtttgttgctcagcaaagaagggccaacaaatagtaggaacacctgaagaaatggtttca |
35754494 |
T |
|
| Q |
399 |
agtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagcaagcacttcgtcttgggagcaccaactagttatgtatcctttatcct |
498 |
Q |
| |
|
| |||||||||||||||||||||||| | || ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| |
|
|
| T |
35754495 |
attgtagaattccaaccacaatgagttagaaaaaccccaactgatggatgagcaagcacttggtcttgcatgcaccaactagttatgtatcctctatcct |
35754594 |
T |
|
| Q |
499 |
taacttcatctagaaactcttgtggcaaagttgaagtctcttcacccatt |
548 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| | |||||||||||| |
|
|
| T |
35754595 |
taacttcatctagaaaatcttgtggcaaagttgaaatttcttcacccatt |
35754644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 255 - 522
Target Start/End: Original strand, 35735512 - 35735779
Alignment:
| Q |
255 |
acaatttcagttatatcatcccttttaacatcatggttaatttccatccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaa |
354 |
Q |
| |
|
|||| |||||||| || || ||||| ||||||| ||||| ||||||||||| ||||| ||| || ||||||||||||||||||||| ||||||| |
|
|
| T |
35735512 |
acaagttcagttacctcttctcttttcacatcatccttaatatccatccctatcccccaagttgtgcttatatacctacaatttgtttgttgctcagcaa |
35735611 |
T |
|
| Q |
355 |
agaaaggccaacaaatagtaggcacaccataagaaatagtttcaagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagcaag |
454 |
Q |
| |
|
|||||||||||| ||| ||||| ||| | ||||||| | ||||||| |||||||||||||||||||| || ||| |||||||||||||||||||||| |
|
|
| T |
35735612 |
agaaaggccaaccaatcataggcttaccttcagaaatactctcaagtgatgaattccaaccacaatgagttaaaaataccccaactgatggatgagcaag |
35735711 |
T |
|
| Q |
455 |
cacttcgtcttgggagcaccaactagttatgtatcctttatccttaacttcatctagaaactcttgtg |
522 |
Q |
| |
|
||||| ||| | ||||| | |||| || ||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
35735712 |
tacttcactttgaggacaccatgttattatataacctctatccttaacttcatctaaaaattcttgtg |
35735779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 110 - 548
Target Start/End: Complemental strand, 625 - 187
Alignment:
| Q |
110 |
attttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttcttcttccattccaagcac |
209 |
Q |
| |
|
||||| ||||||||| ||| | | |||||||||||||||||||| || |||||||||||||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
625 |
attttcatgaagaacctctttgactaacttatgaaaattattgtaggacaatcctcccaaatcagtagcttctgtagctttcttcttccattccaagcac |
526 |
T |
|
| Q |
210 |
ttgtgtctcatttcttttcccttttctcgtttcatcatttcgattacaatttcagttatatcatcccttttaacatcatggttaatttccatccctattt |
309 |
Q |
| |
|
|| ||||||||||||||||||||||||| || ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
525 |
ttatgtctcatttcttttcccttttctccttccatcatttccatcacaatttcttttatatcatcccttttaacatcatggttaatttccatccctattt |
426 |
T |
|
| Q |
310 |
tccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaatagtttcaagtgtagaatt |
409 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||||||||| |
|
|
| T |
425 |
tccaagtgttgcataaatacctacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcataccagaagatatagcttcaagtgtagaatt |
326 |
T |
|
| Q |
410 |
ccaaccacaatgagtcaagaatcccccaactgatggatgagcaagcacttcgtcttgggagcaccaactagttatgtatcctttatccttaacttcatct |
509 |
Q |
| |
|
||||||||||||||| | ||| || ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| || || |||||| |
|
|
| T |
325 |
ccaaccacaatgagttaggaaccctccaaccgatggatgagcaagcacttgatcttgaaagcaccaactagttatgtatcctctatcttttacctcatct |
226 |
T |
|
| Q |
510 |
agaaactcttgtggcaaagttgaagtctcttcacccatt |
548 |
Q |
| |
|
||||||||||||||||||| |||||| || |||||||| |
|
|
| T |
225 |
agaaactcttgtggcaaagatgaagtttccacacccatt |
187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 110 - 548
Target Start/End: Complemental strand, 625 - 187
Alignment:
| Q |
110 |
attttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttcttcttccattccaagcac |
209 |
Q |
| |
|
||||| ||||||||| ||| | | |||||||||||||||||||| || |||||||||||||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
625 |
attttcatgaagaacctctttgactaacttatgaaaattattgtaggacaatcctcccaaatcagtagcttctgtagctttcttcttccattccaagcac |
526 |
T |
|
| Q |
210 |
ttgtgtctcatttcttttcccttttctcgtttcatcatttcgattacaatttcagttatatcatcccttttaacatcatggttaatttccatccctattt |
309 |
Q |
| |
|
|| ||||||||||||||||||||||||| || ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
525 |
ttatgtctcatttcttttcccttttctccttccatcatttccatcacaatttcttttatatcatcccttttaacatcatggttaatttccatccctattt |
426 |
T |
|
| Q |
310 |
tccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaatagtttcaagtgtagaatt |
409 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||||||||| |
|
|
| T |
425 |
tccaagtgttgcataaatacctacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcataccagaagatatagcttcaagtgtagaatt |
326 |
T |
|
| Q |
410 |
ccaaccacaatgagtcaagaatcccccaactgatggatgagcaagcacttcgtcttgggagcaccaactagttatgtatcctttatccttaacttcatct |
509 |
Q |
| |
|
||||||||||||||| | ||| || ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| || || |||||| |
|
|
| T |
325 |
ccaaccacaatgagttaggaaccctccaaccgatggatgagcaagcacttgatcttgaaagcaccaactagttatgtatcctctatcttttacctcatct |
226 |
T |
|
| Q |
510 |
agaaactcttgtggcaaagttgaagtctcttcacccatt |
548 |
Q |
| |
|
||||||||||||||||||| |||||| || |||||||| |
|
|
| T |
225 |
agaaactcttgtggcaaagatgaagtttccacacccatt |
187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 255 - 345
Target Start/End: Complemental strand, 1173 - 1083
Alignment:
| Q |
255 |
acaatttcagttatatcatcccttttaacatcatggttaatttccatccctattttccaagacttgcataaatacctacaatttgtttgtt |
345 |
Q |
| |
|
|||| ||| ||||| || |||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1173 |
acaagttcggttatctcttcccttttcacatcatggttaatttccatcccaattttccaagtgttgcataaatacctacaatttgtttgtt |
1083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 166 - 13
Alignment:
| Q |
97 |
gaactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttcttctt |
196 |
Q |
| |
|
|||||||||| || || ||||||||||| ||| | || |||||||| |||||||||||||| |||||||||||| ||||| | || |||||||||||| |
|
|
| T |
166 |
gaactcaaatggccttgtgatgaagaacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttctt |
67 |
T |
|
| Q |
197 |
ccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttc |
250 |
Q |
| |
|
||| |||| | ||| ||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
66 |
ccacaccaaactcttttgtctcatttcttttcctttttctccttccatcatttc |
13 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 41511491 - 41511448
Alignment:
| Q |
395 |
ttcaagtgtagaattccaaccacaatgagtcaagaatcccccaa |
438 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
41511491 |
ttcaagtgttgaattccaaccacaatgagtcaaaaatccaccaa |
41511448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 26672102 - 26672139
Alignment:
| Q |
330 |
ctacaatttgtttgttgttcagcaaagaaaggccaaca |
367 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26672102 |
ctacaattagtttgttgttcagcaaaaaaaggccaaca |
26672139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 26901388 - 26901425
Alignment:
| Q |
330 |
ctacaatttgtttgttgttcagcaaagaaaggccaaca |
367 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26901388 |
ctacaattagtttgttgttcagcaaaaaaaggccaaca |
26901425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 26943700 - 26943737
Alignment:
| Q |
330 |
ctacaatttgtttgttgttcagcaaagaaaggccaaca |
367 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26943700 |
ctacaattagtttgttgttcagcaaaaaaaggccaaca |
26943737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 448
Target Start/End: Original strand, 4516622 - 4516662
Alignment:
| Q |
408 |
ttccaaccacaatgagtcaagaatcccccaactgatggatg |
448 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| ||||| |
|
|
| T |
4516622 |
ttccatccacaatgagtcaagaatcctccaactgaaggatg |
4516662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 37399191 - 37399227
Alignment:
| Q |
332 |
acaatttgtttgttgttcagcaaagaaaggccaacaa |
368 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
37399191 |
acaattagtttgttgttcagcaaaaaaaggccaacaa |
37399227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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