View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16815_low_1 (Length: 962)

Name: NF16815_low_1
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16815_low_1
NF16815_low_1
[»] chr4 (1 HSPs)
chr4 (9-946)||(23031600-23032538)
[»] chr2 (1 HSPs)
chr2 (116-336)||(41065273-41065493)


Alignment Details
Target: chr4 (Bit Score: 865; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 865; E-Value: 0
Query Start/End: Original strand, 9 - 946
Target Start/End: Original strand, 23031600 - 23032538
Alignment:
Q  9 cgagtgagatgaaaagcgcaaccgaatcaaacacgatgaatactagaaacgcaggttctgaagctatgtttgcttcgccaagggattttccgttacgaac 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23031600 cgagggagatgaaaagcgcaaccgaatcaaacacgatgaatactagaaacgcaggttctgaagctatgtttgcttcgccaagggattttcctttacgaac 23031699  T
Q  109 nnnnnnnggatcatccacgaattggcctgggacagtgaagatggctgcgaaggcaaccgttgctatgaggactgcgacgactgttgtggagtttattgca 208  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23031700 tttttttggatcatccacgaattggcctgggacagtgaagatggctgcgaaggcaaccgttgctatgaggactgcgacgactgttgtggagtttattgca 23031799  T
Q  209 ttgttgagtccttctgtgtgcattttgttgagacgttttgcgattccttgaacgcttcttcgcgtttggcgagtgtgttctagttggtgatggacttcat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23031800 ttgttgagtccttctgtgtgcattttgttgagacgttttgcgattccttgaacgcttcttcgcgtttggcgagtgtgttctagttggtgatggacttcat 23031899  T
Q  309 gctttatgtcactgactgtttgttttaattctctggttgcagctgtttttggttgagattttatcgatttgctgctttgaacaccgtgttctgtaagaat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23031900 gctttatgtcactgactgtttgttttaattctctggttgcagctgtttttggttgagattttatcgatttgctgctttgaacaccgtgttctgtaagaat 23031999  T
Q  409 gctttttacttcagaatttcctgttttctcagctgtgtctaacgctgtttcgccacttttgtttactgccatgccatttgtttcactttgtccaagtatc 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23032000 gctttttacttcagaatttcctgttttctcagctgtgtctaacgctgtttcgccacttttgtttactgccatgccatttgtttcactttgtccaagtatc 23032099  T
Q  509 aacttgataatctgcatatacaaaagttaaaagaggttaattatttagcctctatcctgaataatccagcacttactccaaataggtagatacaattcaa 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23032100 aacttgataatctgcatatacaaaagttaaaagaggttaattatttagcctctatcctgaataatccagcacttactccaagtaggtagatacaattcaa 23032199  T
Q  609 ttatgcatgaggaatatcatatcatactttatactgtgttattacttattagaattatattcatgttcttcatccccaagaattatcacagttcttattc 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23032200 ttatgcatgaggaatatcatatcatactttatactgtgttattacttattagaattatattcatgttcttcatccccaagaattatcacagttcttattc 23032299  T
Q  709 ttgttttcaatgcaaaacatgcacatagaatatatatagtatagctatcaagtacaaacacgtagggaattaggtgtgtcttcgtgtttgacacgtgtct 808  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23032300 ttgttttcaatgcaaaacatgcacatagaatatatatagtatagctatcaagtacaaacacgtagggaattaggcgtgtcttcgtgtttgacacgtgtct 23032399  T
Q  809 gtctgcacccgtacaacatctatcggtatcaatgtcctatg-nnnnnnnacataaacagtgttgacatgtttgtgtttgtgttgtatcaggtgtttgtgt 907  Q
    |||||||||||||| ||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23032400 gtctgcacccgtacgacatctatcagtatcaatgtcctatgttttttttacataaacagtgttgacatgtttgtgtttgtgttgtatcaggtgtttgtgt 23032499  T
Q  908 cgaagtcagtgcttcgtaggataatagtgaggaaaatct 946  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23032500 cgaagtcagtgcttcgtaggataatagtgaggaaaatct 23032538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 116 - 336
Target Start/End: Original strand, 41065273 - 41065493
Alignment:
Q  116 ggatcatccacgaattggcctgggacagtgaagatggctgcgaaggcaaccgttgctatgaggactgcgacgactgttgtggagtttattgcattgttga 215  Q
    |||||||| || ||||| || ||||||||||| || || || || |||||||||||||| || ||||| || || ||||| |||||||||||||||||||    
T  41065273 ggatcatcaacaaattgaccagggacagtgaaaatcgcagcaaatgcaaccgttgctattagtactgccacaacggttgttgagtttattgcattgttga 41065372  T
Q  216 gtccttctgtgtgcattttgttgagacgttttgcgattccttgaacgcttcttcgcgtttggcgagtgtgttctagttggtgatggacttcatgctttat 315  Q
    |||||||||| | ||| ||||||| ||||||||||||||||||||| | | |||| || ||||| |||||||||| ||||| ||| || || ||||||||    
T  41065373 gtccttctgtattcatcttgttgatacgttttgcgattccttgaacacgttttcgtgtctggcgtgtgtgttctaattggtaatgtacctcgtgctttat 41065472  T
Q  316 gtcactgactgtttgttttaa 336  Q
    ||| || || ||||| |||||    
T  41065473 gtcgcttacagtttgctttaa 41065493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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