View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_10 (Length: 564)
Name: NF16815_low_10
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 18 - 553
Target Start/End: Complemental strand, 49028932 - 49028397
Alignment:
| Q |
18 |
tttgctccctccgattccgcgttcaagaaatccggtcaaccttcactcgatcttcttcgtttccacttcgtcatgttaccgcttccgcagcaaagcttac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49028932 |
tttgctccctccgattccgcgttcaagaaatccggtcaaccttcactcgatcttcttcgtttccacttcgtcatgttaccgcttccgcagcaaagcttac |
49028833 |
T |
|
| Q |
118 |
gccgtcttcccgccggcgctaagcttccgacgatgcttaccggtcagtcgctaaccgtcactacatcattctccgatcgcgtgacctctgttaacaatat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49028832 |
gccgtcttcccgccggcgctaagcttccgacgatgcttaccggtcagtcgctaaccgtcactacatcattctccgatcgcgtgacctctgttaacaatat |
49028733 |
T |
|
| Q |
218 |
caagatcaacggaacgccgatctacgacgacggagttcttcttgtttacggaatcgatagatttttcgatcctaattttcagtacactggtcctagtagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49028732 |
caagatcaacggaacgccgatctacgacgacggagttcttcttgtttacggaatcgatagatttttcgatcctaattttcagtacactggtcctagtagg |
49028633 |
T |
|
| Q |
318 |
agacctaattcatattccaattcatcgtgttctgcgttgaatcgcactctgaactcatcaggttcgtttgaacaagctgtgaaaaccctaaaaactagcg |
417 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49028632 |
aaacctaattcatattccaattcatcgtgttctgcgttgaatcgcactgtgaactcatcaggttcgtttgaacaagctgtgaaaaccctaaaaactagcg |
49028533 |
T |
|
| Q |
418 |
gttattctgttatggcttcgtttctcggtatgcaactctccggtaatataaaccagaatggaattacggtgtttgctcccacggatgagatggtgatgaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49028532 |
gttattctgttatggcttcgtttctcggtatgcaactctccggtaatataaaccagaatggaattacggtgtttgctcccacggatgagatggtgatgaa |
49028433 |
T |
|
| Q |
518 |
ccgcatcggtgatttcgaagactatccttcattctt |
553 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
49028432 |
ccgcatcggtgatttcgaagactatccttcattctt |
49028397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 6e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 21 - 343
Target Start/End: Complemental strand, 32804115 - 32803793
Alignment:
| Q |
21 |
gctccctccgattccgcgttcaagaaatccggtcaaccttcactcgatcttcttcgtttccacttcgtcatgttaccgcttccgcagcaaagcttacgcc |
120 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||| |||||||||||||||| || ||||||||||| |||||||| |||||||||||| | || | |
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| T |
32804115 |
gctccctccgattcagcgttcaagaaatctggtcaaccatcactcgatcttcttctctttcacttcgtcatcttaccgctcccgcagcaaagcctccggc |
32804016 |
T |
|
| Q |
121 |
gtcttcccgccggcgctaagcttccgacgatgcttaccggtcagtcgctaaccgtcactacatcattctccgatcgcgtgacctctgttaacaatatcaa |
220 |
Q |
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|||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||| || | ||||||||||||||| ||||||||||||||||| |
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| T |
32804015 |
gtcttcccgctggcactaagcttccaacgatgctcaccggtcagtcgctaaccgtcactacctcttcctccgatcgcgtgacatctgttaacaatatcaa |
32803916 |
T |
|
| Q |
221 |
gatcaacggaacgccgatctacgacgacggagttcttcttgtttacggaatcgatagatttttcgatcctaattttcagtacactggtcctagtaggaga |
320 |
Q |
| |
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|||| ||| | |||||||||||| | |||||||| ||||||||||||| |||||||| || ||||||| |||||||||||||||||||| || || | |
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| T |
32803915 |
aatcattggatctccgatctacgacaatggagttctctttgtttacggaatagatagattcttggatcctagttttcagtacactggtcctaataagaaa |
32803816 |
T |
|
| Q |
321 |
cctaattcatattccaattcatc |
343 |
Q |
| |
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|||| |||| ||||||||||||| |
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| T |
32803815 |
cctagttcaaattccaattcatc |
32803793 |
T |
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