View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_13 (Length: 556)
Name: NF16815_low_13
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 17 - 546
Target Start/End: Original strand, 3014228 - 3014757
Alignment:
| Q |
17 |
acaaacaattcatccttgccttgaataagatcgacatgattcatgactggaaaacatgtcctaatgctccatttcgtaaagcattgttgcagcagtctaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3014228 |
acaaacaattcatccttgccttgaataagatcgacatgattcatgactggaaaacatgtcctaatgctccttttcgtaaagcattgttgcagcagtctaa |
3014327 |
T |
|
| Q |
117 |
ggatgttcaagatgagtttcataccaggctctctaaggttgtttctcagttcaagacacacggactaaatactgacttgtattataaaaacgaaacaatc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3014328 |
ggatgttcaagatgagtttcataccaggctctctaagtttgtttctcagttcaagacacacggactaaatactgacttgtattataaaaacgaaacaatc |
3014427 |
T |
|
| Q |
217 |
ggaggacaaacattcagcattgtgcccacaagtgctacaaggtatgttgatttgtatgtattatagcgatgttgttgcgtaatatctgcttaattctttc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |||||| |||||||||||||||||||||||| |
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| T |
3014428 |
ggaggacaaacattcagcattgtgcccacaagtgctataaggtatgttgatttgtatgttttacagcgttgttgtcgcgtaatatctgcttaattctttc |
3014527 |
T |
|
| Q |
317 |
tattcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgattcccaaattta |
416 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3014528 |
tattcatgtttttgtatttcatatttcagcggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgattcccaaattta |
3014627 |
T |
|
| Q |
417 |
cctacaatcatgaatatgtgcaggttagccttttttccactagttattattatagttcaatgtttctttgtcacagatctcataacatatcttgttattg |
516 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
3014628 |
cctacaatcatgaatatgtgcaggttagccttttttcaactagttattattatagttcaatgtttcttcgtcgcagatctcataacatatcttgttattg |
3014727 |
T |
|
| Q |
517 |
cagagtcttcgacctagtcgtttatctgtg |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
3014728 |
cagagtcttcgacctagtcgtttatctgtg |
3014757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 319 - 396
Target Start/End: Original strand, 183042 - 183119
Alignment:
| Q |
319 |
ttcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaa |
396 |
Q |
| |
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|||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |
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| T |
183042 |
ttcatgttttagtatttgatatttcaatggtgaaggaatcccagacatgttatttctattgtttcagtggacccaaaa |
183119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 405
Target Start/End: Complemental strand, 591338 - 591250
Alignment:
| Q |
317 |
tattcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgat |
405 |
Q |
| |
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|||| ||||| | |||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| |
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|
| T |
591338 |
tattgatgttctagtatttgatatttcagtggtgaaggaatcacggacatgttatttctattgtttggttggacccaaaagaccatgat |
591250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 29220057 - 29220009
Alignment:
| Q |
63 |
ctggaaaacatgtcctaatgctccatttcgtaaagcattgttgcagcag |
111 |
Q |
| |
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||||||||||||||||||||||||| || |||||||| || |||||||| |
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| T |
29220057 |
ctggaaaacatgtcctaatgctccaatttgtaaagcagtgatgcagcag |
29220009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 5e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 40672468 - 40672231
Alignment:
| Q |
17 |
acaaacaattcatccttgccttgaataagatcgacatgattcatgactggaaaacatgtcctaatgctccatttcgtaaagcattgttgcagcagtctaa |
116 |
Q |
| |
|
||||||||||||| |||||||||||| | |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
40672468 |
acaaacaattcattgttgccttgaatatggtcgacatgattcatcactggaaaacatgtcccaatgctccatttcgtaaagcattgatgcagcagtctaa |
40672369 |
T |
|
| Q |
117 |
ggatgttcaagatgagtttcataccaggctctctaaggttgtttctcagttcaagacacacggactaaatactgacttgtattataaaaacgaaacaat- |
215 |
Q |
| |
|
|| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| || |
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| T |
40672368 |
gggtgttcaagatgactttcataccagggtctctaaggttgtttctcagttcaagacacacgggctaaatactgatttgtattataaaaacataactatt |
40672269 |
T |
|
| Q |
216 |
--cggaggacaaacattcagcattgtgcccacaagtgc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
40672268 |
ggaggaggacaaacattcagcattgtgcccacaagtgc |
40672231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 331 - 478
Target Start/End: Complemental strand, 40672172 - 40672025
Alignment:
| Q |
331 |
tatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgattcccaaatttacctacaatcatgaa |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||| |||| ||| |||||||||| ||| || |
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| T |
40672172 |
tatttcatatttcagtggtgaaggaatcccggatatgttatttctattgtttaagtggatccaatacaccattattcacaagtttacctacagtcaacaa |
40672073 |
T |
|
| Q |
431 |
tatgtgcaggttagccttttttccactagttattattatagttcaatg |
478 |
Q |
| |
|
|||||||||||||| ||||| | | | |||||||||| ||||||| |
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| T |
40672072 |
gctgtgcaggttagcccttttttccccacttattattattattcaatg |
40672025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 317 - 404
Target Start/End: Original strand, 44606401 - 44606488
Alignment:
| Q |
317 |
tattcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatga |
404 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||| ||||||| |
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|
| T |
44606401 |
tattgatgttttagtatttaatatttcagtggtgaaggaatcccggatatgttattactattagttaagtggacccaaaagaccatga |
44606488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 317 - 404
Target Start/End: Original strand, 44627892 - 44627979
Alignment:
| Q |
317 |
tattcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatga |
404 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||| || ||||||| ||||| ||||||| |
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|
| T |
44627892 |
tattgatgttttagtatttaatatttcagtggtgaaggaatcccggatatgttattactattagttcagtggacccaaaagaccatga |
44627979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 44627000 - 44627071
Alignment:
| Q |
63 |
ctggaaaacatgtcctaatgctccatttcgtaaagcattgttgcagcagtctaaggatgttcaagatgagtt |
134 |
Q |
| |
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|||||||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||| ||||||| |
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|
| T |
44627000 |
ctggaaaacatgtcgcaatgctccaattcgtaaagcaatgacgcagcagtctaaggatgttcaaaatgagtt |
44627071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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